CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Solyc03g005500.1 *(Solanum lycopersicum)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	Solyc03g005500.1	T005425_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.763	0.774
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.739	0.736
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.739	0.736
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.731	0.755
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.722	0.717
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.721	0.642
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.720	0.698
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.720	0.698
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.720	0.698
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.717	0.660
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.716	0.679
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.716	0.679
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.714	0.679
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.714	0.679
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.714	0.679
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.714	0.679
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.714	0.679
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.706	0.660
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.704	0.679
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.703	0.623
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.703	0.623
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.694	0.642
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.693	0.642
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.693	0.642
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.693	0.642
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.692	0.660
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.692	0.660
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.692	0.660
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.691	0.679
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.690	0.642
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.690	0.642
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.688	0.679
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.688	0.679
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.688	0.679
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.687	0.679
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.686	0.679
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.686	0.679
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.686	0.679
ERF3 M01607_2.00	Arabidopsis thaliana	CGCCGSCR	YGSCGGCG	PBM Weirauch et al.(2014) pTH8109	0.679	0.623
ERF3 M06584_2.00	Arabidopsis thaliana	YHDYCKCCGCCGYHD	HDRCGGCGGMGRHDR	Dap-seq OMalley et al.(2016) ERF3_col_a	0.679	0.623
ERF3 M06585_2.00	Arabidopsis thaliana	NNHHDNHNNYDCCGCCGYCR	YGRCGGCGGHRNNDNHDDNN	Dap-seq OMalley et al.(2016) ERF3_colamp_a	0.679	0.623
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Solyc03g005500.1.1	AP2	4	57	VKYRGVRKRPWGKYAAEIRDTNRQGGVRVWLGTFSSAEEAARAYDKAAYNMRGH

Links
Other AP2 family TFs
Other *Solanum lycopersicum* TFs

1077 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL004033	Aedes aegypti	AAEL004033	N
AALB008452	Anopheles albimanus	AALB008452	N
AATE008437	Anopheles atroparvus	AATE008437	N
ACEP17328	Atta cephalotes	ACEP17328	N
ACUA026159	Anopheles culicifacies	ACUA026159	N
ADIR006386	Anopheles dirus	ADIR006386	N
AEPI002734	Anopheles epiroticus	AEPI002734	N
AFAF005788	Anopheles farauti	AFAF005788	N
Afo_R002915	Aptenodytes forsteri	Afo_R002915	N
AMAM013696	Anopheles maculatus	AMAM013696	N
AMEC022035	Anopheles melas	AMEC022035	N
AMEM013182	Anopheles merus	AMEM013182	N
AMIN002697	Anopheles minimus	AMIN002697	N
ANCDUO_24100	Ancylostoma duodenale	ANCDUO_24100	N
AQUA009532	Anopheles quadriannulatus	AQUA009532	N
ASIM_0001695301	Anisakis simplex	ASIM_0001695301	N
ASIS022603	Anopheles sinensis	ASIS022603	N
augustus_masked-nMf.1.1.scaf02139-processed-gene-0.0	Meloidogyne floridensis	augustus_masked-nMf.1.1.scaf02139-processed-gene-0.0	N
A_02867	Schistosoma haematobium	A_02867	N
BGIBMGA010051	Bombyx mori	BGIBMGA010051	N
CapteG6193	Capitella teleta	CapteG6193	N
CLEC002616	Cimex lectularius	CLEC002616	N
CPIJ001377	Culex quinquefasciatus	CPIJ001377	N
CpipJ_CPIJ001377	Culex pipiens	CpipJ_CPIJ001377	N
D917_05078	Trichinella nativa	D917_05078	N
D917_08408	Trichinella nativa	D917_08408	N
DICVIV_02945	Dictyocaulus viviparus	DICVIV_02945	N
ECPE_0000358001	Echinostoma caproni	ECPE_0000358001	N
ENSAPLG00000005538	Anas platyrhynchos	ENSAPLG00000005538	I
ENSECAG00000018325	Equus caballus	ENSECAG00000018325	I
ENSMEUG00000009353	Macropus eugenii	ENSMEUG00000009353	I
ENSMICG00000006922	Microcebus murinus	ENSMICG00000006922	I
ENSOANG00000006212	Ornithorhynchus anatinus	ENSOANG00000006212	I
ENSPFOG00000002761	Poecilia formosa	ENSPFOG00000002761	I
ENSSHAG00000002937	Sarcophilus harrisii	ENSSHAG00000002937	I
EVEC_0000660801	Enterobius vermicularis	EVEC_0000660801	N
Gfo_R008628	Geospiza fortis	Gfo_R008628	I
HHAL007703-PA	Halyomorpha halys	HHAL007703-PA	N
Hsal_06171--XP_001121097.1_APIME	Harpegnathos saltator	Hsal_06171--XP_001121097.1_APIME	N
ISCW014430	Ixodes scapularis	ISCW014430	N
KGM_13904	Danaus plexippus	KGM_13904	N
LCUP008694	Lucilia cuprina	LCUP008694	N
LDEC017209	Leptinotarsa decemlineata	LDEC017209	N
MCINX004710	Melitaea cinxia	MCINX004710	N
Myotis_brandtii_NKX6_10030510	Myotis brandtii	Myotis_brandtii_NKX6_10030510	N
NKX6-1	Choloepus hoffmanni	ENSCHOG00000005454	I
NKX6-1	Sus scrofa	ENSSSCG00000009232	I
NKX6-2	Procavia capensis	ENSPCAG00000000708	N
nLs.2.1.2.g06018	Litomosoides sigmodontis	nLs.2.1.2.g06018	N
nRc.2.0.1.g06912	Romanomermis culicivorax	nRc.2.0.1.g06912	N
Ocbimv22025901m.g	Octopus bimaculoides	Ocbimv22025901m.g	N
OFLC_0001516501	Onchocerca flexuosa	OFLC_0001516501	N
PHUM359870	Pediculus humanus	PHUM359870	N
Ppa-cog-1	Pristionchus pacificus	PPA04716	N
PPAI007703	Phlebotomus papatasi	PPAI007703	N
PXEA_0000446101	Protopolystoma xenopodis	PXEA_0000446101	N
scaffold37-EXSNAP2012.8	Pristionchus exspectatus	scaffold37-EXSNAP2012.8	N
SCUD_0002097601	Schistosoma curassoni	SCUD_0002097601	N
SINV25324	Solenopsis invicta	SINV25324	I
Sjc_0111830	Schistosoma japonicum	Sjc_0111830	N
SROB_0001257001	Schistosoma rodhaini	SROB_0001257001	N
TCNE_0001839401	Toxocara canis	TCNE_0001839401	N
TRE_0000644601	Trichobilharzia regenti	TRE_0000644601	N
WUBG_08661	Wuchereria bancrofti	WUBG_08661	N
YQE_09155	Dendroctonus ponderosae	YQE_09155	N

Solyc03g005500.1 (Solanum lycopersicum) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1077 Related TFs

Solyc03g005500.1 **(Solanum lycopersicum)
AP2**