CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cagra.2935s0012 *(Capsella grandiflora)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Cagra.2935s0012	T007771_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.799	0.959
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.736	0.735
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.736	0.735
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.727	0.796
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.727	0.796
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.727	0.796
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.727	0.796
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.727	0.796
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.727	0.837
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.723	0.673
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.716	0.694
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.716	0.755
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.715	0.694
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.714	0.796
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.714	0.796
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.714	0.796
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.711	0.755
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.711	0.735
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.711	0.735
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.710	0.755
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.710	0.755
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.701	0.694
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.699	0.694
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.699	0.694
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.699	0.694
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.698	0.796
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.698	0.796
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.694	0.714
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.692	0.612
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.691	0.735
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.690	0.735
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.688	0.694
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.688	0.694
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.688	0.796
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.688	0.796
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.687	0.633
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.687	0.633
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.687	0.755
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.687	0.755
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.686	0.776
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.686	0.776
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.686	0.776
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.685	0.735
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.684	0.653
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.683	0.776
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.683	0.776
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.683	0.776
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.680	0.714
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.678	0.755
ERF098 M01618_2.00	Arabidopsis thaliana	NNGCCGNC	GNCGGCNN	PBM Weirauch et al.(2014) pTH8259	0.678	0.694
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.677	0.796
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.677	0.796
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.677	0.796
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cagra.2935s0012.1.p	AP2	108	160	RKYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGS

Links
Other AP2 family TFs
Other *Capsella grandiflora* TFs

1574 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
30209.m001510	Ricinus communis	30209.m001510	N
AMTR_s00011p00262800	Amborella trichopoda	AMTR_s00011p00262800	N
Aquca_052_00043	Aquilegia coerulea	Aquca_052_00043	N
BGIOSGA021223	Oryza indica	BGIOSGA021223	N
Bo1g117640	Brassica oleracea	Bo1g117640	N
Bra037587	Brassica rapa	Bra037587	N
BRADI1G42040	Brachypodium distachyon	BRADI1G42040	N
chr3.CM0282.620.nc	Lotus japonicus	chr3.CM0282.620.nc	N
chr3.CM0282.640.nc	Lotus japonicus	chr3.CM0282.640.nc	N
Ciclev10008640m.g	Citrus clementina	Ciclev10008640m.g	N
Cucsa.032420	Cucumis sativus	Cucsa.032420	N
Eucgr.F01181	Eucalyptus grandis	Eucgr.F01181	N
gene27205-v1.0-hybrid	Fragaria vesca	gene27205-v1.0-hybrid	N
GLYMA06G35561	Glycine max	GLYMA06G35561	N
GLYMA12G18490	Glycine max	GLYMA12G18490	N
Gorai.002G065900	Gossypium raimondii	Gorai.002G065900	N
Gorai.013G172000	Gossypium raimondii	Gorai.013G172000	N
GRMZM2G126170	Zea mays	GRMZM2G126170	N
GSMUA_Achr4G18450_001	Musa acuminata	GSMUA_Achr4G18450_001	N
LPERR06G11990	Leersia perrieri	LPERR06G11990	N
Lus10013684.g	Linum usitatissimum	Lus10013684.g	N
MDP0000268133	Malus domestica	MDP0000268133	N
MDP0000315095	Malus domestica	MDP0000315095	N
mgf014854m	Mimulus guttatus	mgf014854m	N
MLOC_61712	Hordeum vulgare	MLOC_61712	N
MTR_8g061040	Medicago truncatula	MTR_8g061040	N
OBART06G15310	Oryza barthii	OBART06G15310	N
OLONG_009306	Oryza longistaminata	OLONG_009306	N
OMERI06G16500	Oryza meridionalis	OMERI06G16500	N
OPUNC06G13990	Oryza punctata	OPUNC06G13990	N
orange1.1g016887m.g	Citrus sinensis	orange1.1g016887m.g	N
ORUFI06G16210	Oryza rufipogon	ORUFI06G16210	N
OS06G0485100	Oryza sativa	OS06G0485100	N
Pavir.Ba02980	Panicum virgatum	Pavir.Ba02980	N
Pavir.Bb01334	Panicum virgatum	Pavir.Bb01334	N
PK03811.1	Cannabis sativa	PK03811.1	N
Pm011344	Prunus mume	Pm011344	N
POPTR_0011s09970	Populus trichocarpa	POPTR_0011s09970	N
PRUPE_ppa007389mg	Prunus persica	PRUPE_ppa007389mg	N
SapurV1A.0083s0320	Salix purpurea	SapurV1A.0083s0320	N
SapurV1A.0303s0100	Salix purpurea	SapurV1A.0303s0100	N
Sb02g020940	Sorghum bicolor	Sb02g020940	N
Si030167m.g	Setaria italica	Si030167m.g	N
Solyc10g007130.2	Solanum lycopersicum	Solyc10g007130.2	N
TCM_046875	Theobroma cacao	TCM_046875	N
Traes_7DS_197A95728	Triticum aestivum	Traes_7DS_197A95728	N
TRIUR3_19251	Triticum urartu	TRIUR3_19251	N
VIT_19s0014g01880	Vitis vinifera	VIT_19s0014g01880	N

Cagra.2935s0012 (Capsella grandiflora) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1574 Related TFs

Cagra.2935s0012 **(Capsella grandiflora)
AP2**