Gorai.002G065900 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.002G065900 T228670_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G065900.1 Homeodomain 22 78
Gorai.002G065900.2 Homeodomain 12 76

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0011s09970 Populus trichocarpa POPTR_0011s09970 N 0.838
SapurV1A.0083s0320 Salix purpurea SapurV1A.0083s0320 N 0.838
PK03811.1 Cannabis sativa PK03811.1 N 0.835
Bo1g117640 Brassica oleracea Bo1g117640 N 0.833
Bra037587 Brassica rapa Bra037587 N 0.833
orange1.1g016887m.g Citrus sinensis orange1.1g016887m.g N 0.830
Bra022316 Brassica rapa Bra022316 N 0.829
POPTR_0174s00240 Populus trichocarpa POPTR_0174s00240 N 0.825
Cucsa.032420 Cucumis sativus Cucsa.032420 N 0.825
evm.TU.supercontig_80.16 Carica papaya evm.TU.supercontig_80.16 N 0.817
GSMUA_Achr4G18450_001 Musa acuminata GSMUA_Achr4G18450_001 N 0.808
mgf014854m Mimulus guttatus mgf014854m N 0.795
AT3G18380 Arabidopsis thaliana AT3G18380 N 0.792
fgenesh2_kg.3__2039__AT3G18380.2 Arabidopsis lyrata fgenesh2_kg.3__2039__AT3G18380.2 N 0.792
30209.m001510 Ricinus communis 30209.m001510 N 0.781
Bostr.19424s0824 Boechera stricta Bostr.19424s0824 N 0.780
Cagra.1681s0007 Capsella grandiflora Cagra.1681s0007 N 0.780
Carubv10014092m.g Capsella rubella Carubv10014092m.g N 0.780
Gorai.013G172000 Gossypium raimondii Gorai.013G172000 N 0.780
TCM_046875 Theobroma cacao TCM_046875 N 0.776
Pm011344 Prunus mume Pm011344 N 0.773
GLYMA12G18490 Glycine max GLYMA12G18490 N 0.767
Bo5g118650 Brassica oleracea Bo5g118650 N 0.763
SapurV1A.0303s0100 Salix purpurea SapurV1A.0303s0100 N 0.753
PRUPE_ppa007389mg Prunus persica PRUPE_ppa007389mg N 0.749
VIT_19s0014g01880 Vitis vinifera VIT_19s0014g01880 N 0.749
Ciclev10008640m.g Citrus clementina Ciclev10008640m.g N 0.749
gene27205-v1.0-hybrid Fragaria vesca gene27205-v1.0-hybrid N 0.749
Solyc10g007130.2 Solanum lycopersicum Solyc10g007130.2 N 0.746
Lus10013684.g Linum usitatissimum Lus10013684.g N 0.746
MDP0000268133 Malus domestica MDP0000268133 N 0.744
MDP0000315095 Malus domestica MDP0000315095 N 0.744
chr3.CM0282.620.nc Lotus japonicus chr3.CM0282.620.nc N 0.744
GLYMA06G35561 Glycine max GLYMA06G35561 N 0.743
MTR_8g061040 Medicago truncatula MTR_8g061040 N 0.742
Lus10017944.g Linum usitatissimum Lus10017944.g N 0.742
Sb02g020940 Sorghum bicolor Sb02g020940 N 0.732
Si030167m.g Setaria italica Si030167m.g N 0.732
Pavir.Ba02980 Panicum virgatum Pavir.Ba02980 N 0.732
Pavir.Bb01334 Panicum virgatum Pavir.Bb01334 N 0.732
GRMZM2G126170 Zea mays GRMZM2G126170 N 0.731
Aquca_052_00043 Aquilegia coerulea Aquca_052_00043 N 0.726
AMTR_s00011p00262800 Amborella trichopoda AMTR_s00011p00262800 N 0.696
OLONG_009303 Oryza longistaminata OLONG_009303 N 0.686
OPUNC06G13910 Oryza punctata OPUNC06G13910 N 0.686
Eucgr.F01181 Eucalyptus grandis Eucgr.F01181 N 0.678
GRMZM2G111204 Zea mays GRMZM2G111204 N 0.660
MLOC_61712 Hordeum vulgare MLOC_61712 N 0.659
Traes_7DS_197A95728 Triticum aestivum Traes_7DS_197A95728 N 0.659
TRIUR3_19251 Triticum urartu TRIUR3_19251 N 0.659
chr3.CM0282.640.nc Lotus japonicus chr3.CM0282.640.nc N 0.645
OGLUM06G16330 Oryza glumaepatula OGLUM06G16330 N 0.644
BGIOSGA021223 Oryza indica BGIOSGA021223 N 0.641
LPERR06G11990 Leersia perrieri LPERR06G11990 N 0.641
OBART06G15310 Oryza barthii OBART06G15310 N 0.641
OLONG_009306 Oryza longistaminata OLONG_009306 N 0.641
OMERI06G16500 Oryza meridionalis OMERI06G16500 N 0.641
OPUNC06G13990 Oryza punctata OPUNC06G13990 N 0.641
ORUFI06G16210 Oryza rufipogon ORUFI06G16210 N 0.641
OS06G0485100 Oryza sativa OS06G0485100 N 0.641
BRADI1G42040 Brachypodium distachyon BRADI1G42040 N 0.637
TRIUR3_24308 Triticum urartu TRIUR3_24308 N 0.636
ECPE_0000616401 Echinostoma caproni ECPE_0000616401 N 0.631
TTAC_0000456101 Hydatigera taeniaeformis TTAC_0000456101 N 0.630
WUBG_18725 Wuchereria bancrofti WUBG_18725 N 0.617
Minc14799 Meloidogyne incognita Minc14799 N 0.617
SPER_0001728701 Spirometra erinaceieuropaei SPER_0001728701 N 0.617
TsM_001096000 Taenia solium TsM_001096000 N 0.616
TASK_0000266001 Taenia asiatica TASK_0000266001 N 0.614
GM19280 Drosophila sechellia FBgn0174180 N 0.613
A_05161 Schistosoma haematobium A_05161 N 0.612
HHAL005220-PA Halyomorpha halys HHAL005220-PA N 0.610
SMU15030938 Schmidtea mediterranea SMU15030938 N 0.610
DME_0000947201 Dracunculus medinensis DME_0000947201 N 0.610
PXEA_0003344501 Protopolystoma xenopodis PXEA_0003344501 N 0.610
SCUD_0001900601 Schistosoma curassoni SCUD_0001900601 N 0.610
SMRZ_0000101601 Schistosoma margrebowiei SMRZ_0000101601 N 0.610
SMTD_0000662501 Schistosoma mattheei SMTD_0000662501 N 0.610
snap_masked-nMf.1.1.scaf05842-processed-gene-0.7 Meloidogyne floridensis snap_masked-nMf.1.1.scaf05842-processed-gene-0.7 N 0.610
SPER_0002932401 Spirometra erinaceieuropaei SPER_0002932401 N 0.610
TRE_0000350801 Trichobilharzia regenti TRE_0000350801 N 0.610
TRE_0000664901 Trichobilharzia regenti TRE_0000664901 N 0.610
ENSGALG00000020423 Gallus gallus ENSGALG00000020423 N 0.606
ANCCAN_14745 Ancylostoma caninum ANCCAN_14745 N 0.606
ANCCAN_19464 Ancylostoma caninum ANCCAN_19464 N 0.606
ANCDUO_16102 Ancylostoma duodenale ANCDUO_16102 N 0.606
DICVIV_01479 Dictyocaulus viviparus DICVIV_01479 N 0.606
Hba_10254 Heterorhabditis bacteriophora Hba_10254 N 0.606
NECAME_04746 Necator americanus NECAME_04746 N 0.606
EVEC_0001374701 Enterobius vermicularis EVEC_0001374701 N 0.602
scaffold958-EXSNAP2012.2 Pristionchus exspectatus scaffold958-EXSNAP2012.2 N 0.601
CpipJ_CPIJ015117 Culex pipiens CpipJ_CPIJ015117 N 0.600
CPIJ015117 Culex quinquefasciatus CPIJ015117 N 0.600
YQE_02583 Dendroctonus ponderosae YQE_02583 N 0.600
Ocbimv22022773m.g Octopus bimaculoides Ocbimv22022773m.g I 0.600
SNAPOd2T00027099001 Oikopleura dioica SNAPOd2T00027099001 N 0.600
AARA009718 Anopheles arabiensis AARA009718 N 0.600
ADIR002916 Anopheles dirus ADIR002916 N 0.600
AEPI008543 Anopheles epiroticus AEPI008543 N 0.600
AFAF003697 Anopheles farauti AFAF003697 N 0.600
AFUN006006 Anopheles funestus AFUN006006 N 0.600
AMIN003814 Anopheles minimus AMIN003814 N 0.600
ASTEI04299 Anopheles stephensi ASTEI04299 N 0.600
A_08314 Schistosoma haematobium A_08314 N 0.600
ACAC_0000669701 Angiostrongylus cantonensis ACAC_0000669701 N 0.600
ANCCAN_04049 Ancylostoma caninum ANCCAN_04049 I 0.600
ANCCEY_01003 Ancylostoma ceylanicum ANCCEY_01003 I 0.600
ANCDUO_22747 Ancylostoma duodenale ANCDUO_22747 N 0.600
Hba_19301 Heterorhabditis bacteriophora Hba_19301 N 0.600
PXEA_0000997401 Protopolystoma xenopodis PXEA_0000997401 N 0.600
PXEA_0001530801 Protopolystoma xenopodis PXEA_0001530801 N 0.600
SCUD_0000482001 Schistosoma curassoni SCUD_0000482001 I 0.600
SMTD_0001595501 Schistosoma mattheei SMTD_0001595501 N 0.600
TsM_000403100 Taenia solium TsM_000403100 N 0.600
L596_g19867 Steinernema carpocapsae L596_g19867 N 0.599