CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Lus10032499.g *(Linum usitatissimum)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Lus10032499.g	T008887_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.849	0.824
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.849	0.824
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.845	0.863
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.845	0.863
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.845	0.863
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.815	0.804
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.815	0.804
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.815	0.804
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.812	0.824
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.801	0.804
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.782	0.784
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.756	0.745
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.727	0.745
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.727	0.745
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.725	0.765
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.725	0.765
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.725	0.765
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.724	0.686
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.722	0.725
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.718	0.765
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.718	0.765
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.717	0.725
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.714	0.627
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.714	0.725
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.713	0.745
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.713	0.725
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.713	0.725
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.703	0.667
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.700	0.706
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.700	0.706
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.700	0.706
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.700	0.706
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.700	0.706
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.700	0.725
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.700	0.725
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.698	0.745
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.696	0.686
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.696	0.686
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.694	0.725
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.694	0.725
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.690	0.706
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.690	0.627
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.687	0.725
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.687	0.725
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.687	0.725
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.686	0.706
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.686	0.706
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.683	0.667
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.682	0.706
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.682	0.706
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.682	0.706
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.681	0.647
OS05G0497200 M01636_2.00	Oryza sativa	CGSCGCCR	YGGCGSCG	PBM Weirauch et al.(2014) pTH8640	0.679	0.667
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.679	0.667
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.679	0.667
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Lus10032499	AP2	96	148	RHYRGVRRRPWGKYAAEIRDPTKKGARVWLGTFDTAVEAAKAYDNAAFHLRGS

Links
Other AP2 family TFs
Other *Linum usitatissimum* TFs

1733 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
17752	Aureococcus anophagefferens	17752	N
A1O1_01197	Capronia coronata	A1O1_01197	I
A1O3_08778	Capronia epimyces	A1O3_08778	I
A1O5_06047	Cladophialophora psammophila	A1O5_06047	I
A1O7_01726	Cladophialophora yegresii	A1O7_01726	I
A1O9_00742	Exophiala aquamarina	A1O9_00742	I
AB07914.1	Alternaria brassicicola	AB07914.1	I
ACLA_039500	Aspergillus clavatus	CADACLAG00003509	I
ACRE_011600	Acremonium chrysogenum	ACRE_011600	I
ANIA_02885	Aspergillus nidulans	CADANIAG00010204	I
AOL_s00076g81	Arthrobotrys oligospora	AOL_s00076g81	I
AUEXF2481DRAFT_32739	Aureobasidium subglaciale	AUEXF2481DRAFT_32739	I
BBA_01214	Beauveria bassiana	BBA_01214	I
Bcin01g08840	Botrytis cinerea	Bcin01g08840	I
BGHDH14_bgh04339	Blumeria graminis	BGHDH14_bgh04339	I
CADAFLAG00002475	Aspergillus flavus	CADAFLAG00002475	I
CADANGAG00002256	Aspergillus niger	CADANGAG00002256	I
CCM_01555	Cordyceps militaris	CCM_01555	I
CFIO01_13531	Colletotrichum fioriniae	CFIO01_13531	I
CGGC5_9539	Colletotrichum gloeosporioides	CGGC5_9539	I
CH063_04081	Colletotrichum higginsianum	CH063_04081	I
CLEC003860	Cimex lectularius	CLEC003860	I
CMQ_8074	Grosmannia clavigera	CMQ_8074	I
COCC4DRAFT_135921	Bipolaris maydis	COCC4DRAFT_135921	I
COCCADRAFT_24603	Bipolaris zeicola	COCCADRAFT_24603	I
COCMIDRAFT_97534	Bipolaris oryzae	COCMIDRAFT_97534	I
COCSADRAFT_180514	Bipolaris sorokiniana	COCSADRAFT_180514	I
COCSADRAFT_226282	Bipolaris sorokiniana	COCSADRAFT_226282	I
COCVIDRAFT_115390	Bipolaris victoriae	COCVIDRAFT_115390	I
COCVIDRAFT_17843	Bipolaris victoriae	COCVIDRAFT_17843	I
CPUR_04901	Claviceps purpurea	CPUR_04901	I
CSUB01_00364	Colletotrichum sublineola	CSUB01_00364	I
CTHT_0053790	Chaetomium thermophilum	CTHT_0053790	I
DRE_06603	Drechslerella stenobrocha	DRE_06603	I
EPUS_09213	Endocarpon pusillum	EPUS_09213	I
estExt_fgenesh3_kg.C_40082	Neurospora discreta	estExt_fgenesh3_kg.C_40082	I
estExt_fgeneshMC_pg.C_20910	Mucor circinelloides	estExt_fgeneshMC_pg.C_20910	I
ETH_00031100	Eimeria tenella	ETH_00031100	I
EV44_g2383	Erysiphe necator	EV44_g2383	I
F503_04824	Ophiostoma piceae uamh	F503_04824	I
FFUJ_02729	Fusarium fujikuroi	FFUJ_02729	I
fgenesh1_pm.C_scaffold_14000132	Cochliobolus heterostrophus C5	fgenesh1_pm.C_scaffold_14000132	I
fgeneshMC_pg.3_#_1190	Mucor circinelloides	fgeneshMC_pg.3_#_1190	I
FGRRES_07116	Fusarium graminearum	FGRRES_07116	I
FOXG_01686	Fusarium oxysporum	FOXG_01686	I
FPSE_02664	Fusarium pseudograminearum	FPSE_02664	I
G647_10093	Cladophialophora carrionii	G647_10093	I
GGTG_01518	Gaeumannomyces graminis	GGTG_01518	I
GLRG_01394	Colletotrichum graminicola	GLRG_01394	I
GMDG_05273	Pseudogymnoascus destructans	GMDG_05273	I
GSTUM_00011974001	Tuber melanosporum	GSTUM_00011974001	I
gw1.4.435.1	Cryphonectria parasitica	gw1.4.435.1	I
Hba_18326	Heterorhabditis bacteriophora	Hba_18326	I
HMPREF1120_00213	Exophiala dermatitidis	HMPREF1120_00213	I
HMPREF1541_06859	Cyphellophora europaea	HMPREF1541_06859	I
HNAJ_0000793101	Hymenolepis nana	HNAJ_0000793101	I
LEMA_P064360.1	Leptosphaeria maculans	LEMA_P064360.1	I
M437DRAFT_15090	Aureobasidium melanogenum	M437DRAFT_15090	I
M438DRAFT_338286	Aureobasidium pullulans	M438DRAFT_338286	I
M7I_1578	Glarea lozoyensis	M7I_1578	I
MAJ_04030	Metarhizium majus	MAJ_04030	I
MANI_030028	Metarhizium anisopliae	MANI_030028	I
MAPG_06737	Magnaporthe poae	MAPG_06737	I
MBM_02410	Marssonina brunnea	MBM_02410	I
MBR_01483	Metarhizium brunneum	MBR_01483	I
MELLADRAFT_85039	Melampsora laricipopulina	MELLADRAFT_85039	I
mgf024995m	Mimulus guttatus	mgf024995m	I
MGG_01641	Magnaporthe oryzae	MGG_01641	I
MGU_02157	Metarhizium guizhouense	MGU_02157	I
MPH_08050	Macrophomina phaseolina	MPH_08050	I
MYCTH_2294934	Myceliophthora thermophila	MYCTH_2294934	I
NCU02819	Neurospora crassa	NCU02819	D
NEUTE1DRAFT_106544	Neurospora tetrasperma	NEUTE1DRAFT_106544	I
OCS_01486	Ophiocordyceps sinensis	OCS_01486	I
OIDMADRAFT_143526	Oidiodendron maius	OIDMADRAFT_143526	I
OSTLU_31946	Ostreococcus lucimarinus	OSTLU_31946	I
Pc13g09020	Penicillium chrysogenum	Pc13g09020	I
PCH_Pc13g09020	Penicillium rubens	PCH_Pc13g09020	I
PDIP_30290	Penicillium digitatum	PDIP_30290	I
PEX1_089460	Penicillium expansum	PEX1_089460	I
PGTG_10028	Puccinia graminis	PGTG_10028	I
PGTG_12120	Puccinia graminis	PGTG_12120	I
PITC_061650	Penicillium italicum	PITC_061650	I
PODANS_1_7390	Podospora anserina	PODANS_1_7390	I
PTRG_02818	Pyrenophora triticirepentis	PTRG_02818	I
PTT_17082	Pyrenophora teres	PTT_17082	I
PV04_00198	Capronia semiimmersa	PV04_00198	I
PV05_09944	Exophiala xenobiotica	PV05_09944	I
PV06_04154	Exophiala oligosperma	PV06_04154	I
PV07_09313	Cladophialophora immunda	PV07_09313	I
PV08_04655	Exophiala spinifera	PV08_04655	I
PV09_06887	Verruconis gallopava	PV09_06887	I
PV10_01993	Exophiala mesophila	PV10_01993	I
PV10_02644	Exophiala mesophila	PV10_02644	I
PV11_07328	Exophiala sideris	PV11_07328	I
PV11_09703	Exophiala sideris	PV11_09703	I
RHTO_03328	Rhodosporidium toruloides	RHTO_03328	I
RO3G_07013	Rhizopus oryzae	RO3G_07013	I
RO3G_07543	Rhizopus oryzae	RO3G_07543	I
RO3G_09728	Rhizopus oryzae	RO3G_09728	I
RO3G_16060	Rhizopus oryzae	RO3G_16060	I
S40288_09735	Stachybotrys chartarum	S40288_09735	I
SAPIO_CDS3355	Scedosporium apiospermum	SAPIO_CDS3355	I
SBOR_0403	Sclerotinia borealis	SBOR_0403	I
SETTUDRAFT_157792	Setosphaeria turcica	SETTUDRAFT_157792	I
SMAC_00615	Sordaria macrospora	SMAC_00615	I
SNOG_03674	Stagonospora nodorum	SNOG_03674	I
SNOG_03674	Phaeosphaeria nodorum	SNOG_03674	I
SPBR_04745	Sporothrix brasiliensis	SPBR_04745	I
SS1G_04584	Sclerotinia sclerotiorum	SS1G_04584	I
THITE_2121767	Thielavia terrestris	THITE_2121767	I
TRIATDRAFT_321166	Trichoderma atroviride	TRIATDRAFT_321166	I
TRIVIDRAFT_228694	Trichoderma virens	TRIVIDRAFT_228694	I
U727_00431321111	Penicillium solitum	U727_00431321111	I
V499_08602	Pseudogymnoascus pannorum	V499_08602	I
VDAG_04140	Verticillium dahliae	VDAG_04140	I
VDAG_09161	Verticillium dahliae	VDAG_09161	I
VDBG_04589	Verticillium albo atrum	VDBG_04589	I
VDBG_04589	Verticillium alfalfae	VDBG_04589	I
VHEMI02691	Torrubiella hemipterigena	VHEMI02691	I
VHEMI10573	Torrubiella hemipterigena	VHEMI10573	I
W97_01424	Coniosporium apollinis	W97_01424	I
X797_001988	Metarhizium robertsii	X797_001988	I
Z517_02317	Fonsecaea pedrosoi	Z517_02317	I
Z518_04911	Rhinocladiella mackenziei	Z518_04911	I
Z519_04692	Cladophialophora bantiana	Z519_04692	I

Lus10032499.g (Linum usitatissimum) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1733 Related TFs

Lus10032499.g **(Linum usitatissimum)
AP2**