Thhalv10025867m.g (Eutrema salsugineum)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Thhalv10025867m.g T024906_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC5
M06717_2.00 		Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT		 Dap-seq
OMalley et al.(2016)
BPC5_col_a 		0.777 0.777
BPC5
M06718_2.00 		Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTYTCTCYYNBYYYY		 Dap-seq
OMalley et al.(2016)
BPC5_colamp_a 		0.777 0.777
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10025867m BBR 1 295

Links

Other BBR family TFs
Other Eutrema salsugineum TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29848.m004650 Ricinus communis 29848.m004650 I
29889.m003420 Ricinus communis 29889.m003420 I
Aquca_001_00822 Aquilegia coerulea Aquca_001_00822 I
BGIOSGA006916 Oryza indica BGIOSGA006916 I
Bo2g010330 Brassica oleracea Bo2g010330 I
Bo3g069000 Brassica oleracea Bo3g069000 I
Bo5g122830 Brassica oleracea Bo5g122830 I
Bo9g171430 Brassica oleracea Bo9g171430 I
Bostr.19424s0909 Boechera stricta Bostr.19424s0909 I
Bostr.23997s0021 Boechera stricta Bostr.23997s0021 I
Bra001671 Brassica rapa Bra001671 I
Bra008976 Brassica rapa Bra008976 I
Bra021258 Brassica rapa Bra021258 I
Bra022225 Brassica rapa Bra022225 I
Bra023317 Brassica rapa Bra023317 I
BRADI1G36750 Brachypodium distachyon BRADI1G36750 I
BRADI3G07540 Brachypodium distachyon BRADI3G07540 I
Cagra.4396s0065 Capsella grandiflora Cagra.4396s0065 I
Cagra.7526s0027 Capsella grandiflora Cagra.7526s0027 I
cassava328.valid.m1 Manihot esculenta cassava328.valid.m1 I
cassava8163.valid.m1 Manihot esculenta cassava8163.valid.m1 I
Ca_21380 Cicer arietinum Ca_21380 I
Ca_22618 Cicer arietinum Ca_22618 I
chr6.LjT14A08.90.nd Lotus japonicus chr6.LjT14A08.90.nd I
Ciclev10009720m.g Citrus clementina Ciclev10009720m.g I
Cla022656 Citrullus lanatus Cla022656 I
Cucsa.162360 Cucumis sativus Cucsa.162360 I
Cucsa.310450 Cucumis sativus Cucsa.310450 I
Eucgr.C02802 Eucalyptus grandis Eucgr.C02802 I
evm.TU.supercontig_115.9 Carica papaya evm.TU.supercontig_115.9 I
evm.TU.supercontig_146.5 Carica papaya evm.TU.supercontig_146.5 N
gene11666-v1.0-hybrid Fragaria vesca gene11666-v1.0-hybrid I
gene22776-v1.0-hybrid Fragaria vesca gene22776-v1.0-hybrid N
GLYMA03G18990 Glycine max GLYMA03G18990 I
GLYMA08G41450 Glycine max GLYMA08G41450 I
GLYMA16G13570 Glycine max GLYMA16G13570 I
GLYMA18G14750 Glycine max GLYMA18G14750 I
GSMUA_Achr10G27050_001 Musa acuminata GSMUA_Achr10G27050_001 I
GSMUA_Achr5G06060_001 Musa acuminata GSMUA_Achr5G06060_001 I
GSMUA_Achr7G09980_001 Musa acuminata GSMUA_Achr7G09980_001 I
GSMUA_Achr9G28570_001 Musa acuminata GSMUA_Achr9G28570_001 I
HY5 Arabidopsis thaliana AT5G11260 D
HY5 Vitis vinifera VIT_04s0008g05210 I
HY5 Arabidopsis lyrata scaffold_601144.1 I
HYH Vitis vinifera VIT_05s0020g01090 N
HYH Arabidopsis thaliana AT3G17609 D
HYH Arabidopsis lyrata fgenesh2_kg.3__1938__AT3G17609.2 I
LjB12O06.40.nc Lotus japonicus LjB12O06.40.nc I
Lus10002900.g Linum usitatissimum Lus10002900.g I
MDP0000264514 Malus domestica MDP0000264514 I
MDP0000279891 Malus domestica MDP0000279891 N
MDP0000586302 Malus domestica MDP0000586302 I
MDP0000834642 Malus domestica MDP0000834642 I
mgf012104m Mimulus guttatus mgf012104m I
mgf014305m Mimulus guttatus mgf014305m I
MTR_3g436010 Medicago truncatula MTR_3g436010 I
MTR_7g057160 Medicago truncatula MTR_7g057160 I
OB02G17160 Oryza brachyantha OB02G17160 I
OGLUM02G07920 Oryza glumaepatula OGLUM02G07920 I
ONIVA02G09400 Oryza nivara ONIVA02G09400 I
OPUNC02G07060 Oryza punctata OPUNC02G07060 I
orange1.1g030957m.g Citrus sinensis orange1.1g030957m.g I
ORGLA02G0074000 Oryza glaberrima ORGLA02G0074000 I
OS02G0203000 Oryza sativa OS02G0203000 I
PGSC0003DMG401020784 Solanum tuberosum PGSC0003DMG401020784 I
PK17235.1 Cannabis sativa PK17235.1 I
Pm007163 Prunus mume Pm007163 I
POPTR_0006s26800 Populus trichocarpa POPTR_0006s26800 I
POPTR_0010s00680 Populus trichocarpa POPTR_0010s00680 I
POPTR_0018s01530 Populus trichocarpa POPTR_0018s01530 I
PRUPE_ppa011967mg Prunus persica PRUPE_ppa011967mg I
PRUPE_ppa012064mg Prunus persica PRUPE_ppa012064mg I
Q39895_SOYBN Glycine max Q39895_SOYBN D
SapurV1A.0043s0530 Salix purpurea SapurV1A.0043s0530 I
SapurV1A.0073s0400 Salix purpurea SapurV1A.0073s0400 I
SapurV1A.0264s0450 Salix purpurea SapurV1A.0264s0450 I
SapurV1A.1258s0140 Salix purpurea SapurV1A.1258s0140 I
SapurV1A.2641s0040 Salix purpurea SapurV1A.2641s0040 I
SapurV1A.3812s0010 Salix purpurea SapurV1A.3812s0010 I
SELMODRAFT_173274 Selaginella moellendorffii SELMODRAFT_173274 I
SELMODRAFT_451330 Selaginella moellendorffii SELMODRAFT_451330 I
Solyc08g061130.2 Solanum lycopersicum Solyc08g061130.2 I
Thhalv10004860m.g Eutrema salsugineum Thhalv10004860m.g I
Thhalv10014851m.g Eutrema salsugineum Thhalv10014851m.g I
Thhalv10021704m.g Eutrema salsugineum Thhalv10021704m.g I
Traes_6BS_993CBD840 Triticum aestivum Traes_6BS_993CBD840 I