Bra004355 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra004355 T031361_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.914 0.980
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.914 0.980
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.914 0.980
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.894 0.784
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.894 0.784
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.894 0.784
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.894 0.784
fgenesh1_pg.scaffold_37000071
M01757_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8584 		0.861 0.745
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.851 0.471
UNE10
M01705_2.00 		Arabidopsis thaliana
HCACGTGM
KCACGTGD		 PBM
Weirauch et al.(2014)
pTH8112 		0.843 0.451
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004355.1-P bHLH 77 127

Links

Other bHLH family TFs
Other Brassica rapa TFs

301 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL003020 Aedes aegypti AAEL003020 I
AAEL007190 Aedes aegypti AAEL007190 I
AALB001133 Anopheles albimanus AALB001133 I
AALB003284 Anopheles albimanus AALB003284 I
Aan_R004022 Calypte anna Aan_R004022 I
AARA002508 Anopheles arabiensis AARA002508 I
AARA003887 Anopheles arabiensis AARA003887 I
AATE003142 Anopheles atroparvus AATE003142 I
AATE006814 Anopheles atroparvus AATE006814 I
ACOM026748 Anopheles coluzzii ACOM026748 I
ACOM036097 Anopheles coluzzii ACOM036097 I
ACUA015273 Anopheles culicifacies ACUA015273 I
ACYPI007601 Acyrthosiphon pisum ACYPI007601 I
ADAC006907 Anopheles darlingi ADAC006907 I
ADAC006988 Anopheles darlingi ADAC006988 I
ADIR001527 Anopheles dirus ADIR001527 I
AEPI011017 Anopheles epiroticus AEPI011017 I
AEPI011067 Anopheles epiroticus AEPI011067 I
AFAF011447 Anopheles farauti AFAF011447 I
AFAF018214 Anopheles farauti AFAF018214 I
Afo_R007066 Aptenodytes forsteri Afo_R007066 I
AFUN007550 Anopheles funestus AFUN007550 I
AGAP000819 Anopheles gambiae AGAP000819 I
Alligator_sinensis_CCG020979.1 Alligator sinensis Alligator_sinensis_CCG020979.1 I
AMAM000431 Anopheles maculatus AMAM000431 I
AMEC019536 Anopheles melas AMEC019536 I
AMEM000983 Anopheles merus AMEM000983 I
AMEM005434 Anopheles merus AMEM005434 I
AMIN005547 Anopheles minimus AMIN005547 I
ANCCAN_05510 Ancylostoma caninum ANCCAN_05510 I
ANCCEY_01724 Ancylostoma ceylanicum ANCCEY_01724 I
AQUA002816 Anopheles quadriannulatus AQUA002816 I
ASIS014807 Anopheles sinensis ASIS014807 I
ASTEI01071 Anopheles stephensi ASTEI01071 I
ASU_07884 Ascaris suum ASU_07884 I
BGLB004019 Biomphalaria glabrata BGLB004019 I
Bm4485 Brugia malayi Bm4485 I
BTMF_0001091401 Brugia timori BTMF_0001091401 I
BXY_0327700 Bursaphelenchus xylophilus BXY_0327700 I
CapteG171557 Capitella teleta CapteG171557 I
CapteG226190 Capitella teleta CapteG226190 I
CBG14155 Caenorhabditis briggsae CBG14155 I
CBN22518 Caenorhabditis brenneri CBN22518 I
Cflo_06716--XP_001121187.1_APIME Camponotus floridanus Cflo_06716--XP_001121187.1_APIME I
CGI_10007932 Crassostrea gigas CGI_10007932 I
CGI_10028920 Crassostrea gigas CGI_10028920 I
CGOC_0000187501 Cylicostephanus goldi CGOC_0000187501 I
CJA07370 Caenorhabditis japonica CJA07370 I
Cmyd_10012017 Chelonia mydas Cmyd_10012017 I
CPIJ012467 Culex quinquefasciatus CPIJ012467 I
CpipJ_CPIJ012467 Culex pipiens CpipJ_CPIJ012467 I
CRE00427 Caenorhabditis remanei CRE00427 I
csin100859 Clonorchis sinensis csin100859 I
D917_05007 Trichinella nativa D917_05007 I
D917_09121 Trichinella nativa D917_09121 I
DAPPUDRAFT_106791 Daphnia pulex DAPPUDRAFT_106791 I
DAPPUDRAFT_299738 Daphnia pulex DAPPUDRAFT_299738 I
DICVIV_11193 Dictyocaulus viviparus DICVIV_11193 I
ECPE_0000243601 Echinostoma caproni ECPE_0000243601 I
EFV56045 Trichinella spiralis EFV56045 I
EFV59616 Trichinella spiralis EFV59616 I
ENSAMEG00000008835 Ailuropoda melanoleuca ENSAMEG00000008835 I
ENSAMXG00000017872 Astyanax mexicanus ENSAMXG00000017872 I
ENSBTAP00000048604-D1 Bos grunniens ENSBTAP00000048604-D1 I
ENSCSAG00000013721 Chlorocebus sabaeus ENSCSAG00000013721 I
ENSFALG00000009699 Ficedula albicollis ENSFALG00000009699 I
ENSGMOG00000008342 Gadus morhua ENSGMOG00000008342 I
ENSGMOG00000016036 Gadus morhua ENSGMOG00000016036 I
ENSGMOG00000019194 Gadus morhua ENSGMOG00000019194 I
ENSLACG00000015675 Latimeria chalumnae ENSLACG00000015675 I
ENSLACG00000022378 Latimeria chalumnae ENSLACG00000022378 I
ENSLOCG00000014973 Lepisosteus oculatus ENSLOCG00000014973 I
ENSMEUG00000016597 Macropus eugenii ENSMEUG00000016597 I
ENSMPUG00000017103 Mustela putorius furo ENSMPUG00000017103 I
ENSNLEG00000013807 Nomascus leucogenys ENSNLEG00000013807 I
ENSOARG00000018808 Ovis aries ENSOARG00000018808 I
ENSONIG00000007109 Oreochromis niloticus ENSONIG00000007109 I
ENSONIG00000013281 Oreochromis niloticus ENSONIG00000013281 I
ENSONIG00000015396 Oreochromis niloticus ENSONIG00000015396 I
ENSPANG00000016257 Papio anubis ENSPANG00000016257 I
ENSPFOG00000006106 Poecilia formosa ENSPFOG00000006106 I
ENSPFOG00000006516 Poecilia formosa ENSPFOG00000006516 I
ENSPFOG00000019532 Poecilia formosa ENSPFOG00000019532 I
ENSPMAG00000009792 Petromyzon marinus ENSPMAG00000009792 I
ENSSTOG00000012080 Ictidomys tridecemlineatus ENSSTOG00000012080 I
ENSTGUG00000004498 Taeniopygia guttata ENSTGUG00000004498 I
ENSXMAG00000003283 Xiphophorus maculatus ENSXMAG00000003283 I
ENSXMAG00000010311 Xiphophorus maculatus ENSXMAG00000010311 I
ENSXMAG00000015842 Xiphophorus maculatus ENSXMAG00000015842 I
EVEC_0000564801 Enterobius vermicularis EVEC_0000564801 I
e_gw.107.44.1 Branchiostoma floridae e_gw.107.44.1 I
e_gw.324.28.1 Branchiostoma floridae e_gw.324.28.1 I
fax-1 Caenorhabditis elegans WBGene00001400 I
GA30480 Drosophila pseudoobscura FBgn0264774 D
GB49738 Apis mellifera GB49738 I
GB50436 Apis mellifera GB50436 I
GD11109 Drosophila simulans FBgn0182865 I
GE13645 Drosophila yakuba FBgn0231304 I
genemark-nMf.1.1.scaf00188-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00188-processed-gene-0.4 I
GF13031 Drosophila ananassae FBgn0090064 I
Gfo_R008863 Geospiza fortis Gfo_R008863 I
GH20426 Drosophila grimshawi FBgn0127889 I
GI19610 Drosophila mojavensis FBgn0142347 I
GJ14974 Drosophila virilis FBgn0202177 I
GK20892 Drosophila willistoni FBgn0222886 I
GL17752 Drosophila persimilis FBgn0155355 I
GPLIN_000669800 Globodera pallida GPLIN_000669800 I
Hba_15323 Heterorhabditis bacteriophora Hba_15323 I
HCOI01781300 Haemonchus contortus HCOI01781300 I
HelroG139475 Helobdella robusta HelroG139475 I
HHAL007294-PA Halyomorpha halys HHAL007294-PA I
Hr51 Drosophila melanogaster FBgn0034012 D
Hsal_06558--XP_001121187.1_APIME Harpegnathos saltator Hsal_06558--XP_001121187.1_APIME I
Hsal_07902--XP_396999.3_APIME Harpegnathos saltator Hsal_07902--XP_396999.3_APIME I
ISCW010891 Ixodes scapularis ISCW010891 I
ISCW019467 Ixodes scapularis ISCW019467 I
L596_g2163 Steinernema carpocapsae L596_g2163 I
L798_02234 Zootermopsis nevadensis L798_02234 I
L889_g11978 Steinernema feltiae L889_g11978 I
L892_g9366 Steinernema scapterisci L892_g9366 I
L893_g28297 Steinernema glaseri L893_g28297 I
L898_g15355 Steinernema monticolum L898_g15355 I
LDEC022044 Leptinotarsa decemlineata LDEC022044 I
LOAG_06205 Loa loa LOAG_06205 I
LotgiG130367 Lottia gigantea LotgiG130367 I
LotgiG137595 Lottia gigantea LotgiG137595 I
MDOA010244 Musca domestica MDOA010244 I
MhA1_Contig1792.frz3.gene6 Meloidogyne hapla MhA1_Contig1792.frz3.gene6 I
Myotis_brandtii_NR2E3_10027281 Myotis brandtii Myotis_brandtii_NR2E3_10027281 I
nAv.1.0.1.g01891 Acanthocheilonema viteae nAv.1.0.1.g01891 I
nDi.2.2.2.g10236 Dirofilaria immitis nDi.2.2.2.g10236 I
nLs.2.1.2.g01701 Litomosoides sigmodontis nLs.2.1.2.g01701 I
nOo.2.0.1.g01040 Onchocerca ochengi nOo.2.0.1.g01040 I
nOo.2.0.1.g10097 Onchocerca ochengi nOo.2.0.1.g10097 I
nOo.2.0.1.g11611 Onchocerca ochengi nOo.2.0.1.g11611 I
nr2e1 Danio rerio ENSDARG00000017107 I
nr2e1 Gasterosteus aculeatus ENSGACG00000008934 I
nr2e1 Oryzias latipes ENSORLG00000013426 I
nr2e1 Tetraodon nigroviridis ENSTNIG00000012282 I
nr2e1 Takifugu rubripes ENSTRUG00000001893 I
NR2E3 Anolis carolinensis ENSACAG00000011910 I
NR2E3 Bos taurus ENSBTAG00000014236 I
NR2E3 Callithrix jacchus ENSCJAG00000018552 I
NR2E3 Cavia porcellus ENSCPOG00000008974 I
nr2e3 Danio rerio ENSDARG00000045904 I
NR2E3 Equus caballus ENSECAG00000015192 I
NR2E3 Felis catus ENSFCAG00000031082 I
NR2E3 Homo sapiens ENSG00000278570 D
nr2e3 Gasterosteus aculeatus ENSGACG00000004739 I
NR2E3 Gasterosteus aculeatus ENSGACG00000017060 I
NR2E3 Gallus gallus ENSGALG00000002093 I
NR2E3 Gorilla gorilla ENSGGOG00000004383 I
NR2E3 Meleagris gallopavo ENSMGAG00000001449 I
NR2E3 Myotis lucifugus ENSMLUG00000008408 I
NR2E3 Macaca mulatta ENSMMUG00000019276 I
NR2E3 Monodelphis domestica ENSMODG00000001949 I
Nr2e3 Mus musculus ENSMUSG00000032292 D
NR2E3 Otolemur garnettii ENSOGAG00000006128 I
NR2E3 Ochotona princeps ENSOPRG00000006427 I
NR2E3 Oryzias latipes ENSORLG00000000011 I
nr2e3 Oryzias latipes ENSORLG00000007175 I
NR2E3 Procavia capensis ENSPCAG00000014733 I
NR2E3 Pan troglodytes ENSPTRG00000007242 I
NR2E3 Pteropus vampyrus ENSPVAG00000009088 I
Nr2e3 Rattus norvegicus ENSRNOG00000050690 I
NR2E3 Sus scrofa ENSSSCG00000004978 I
NR2E3 Tupaia belangeri ENSTBEG00000011672 I
NR2E3 Tetraodon nigroviridis ENSTNIG00000005150 I
NR2E3 Takifugu rubripes ENSTRUG00000015582 I
NR2E3 Tursiops truncatus ENSTTRG00000009410 I
nr2e3 Xenopus tropicalis XB-GENE-485801 I
NV14480 Nasonia vitripennis NV14480 I
OESDEN_00114 Oesophagostomum dentatum OESDEN_00114 I
OFLC_0000991001 Onchocerca flexuosa OFLC_0000991001 I
Ogr12843 Ophisaurus gracilis Ogr12843 I
PHUM039420 Pediculus humanus PHUM039420 I
PHUM331460 Pediculus humanus PHUM331460 I
Ppa-fax-1 Pristionchus pacificus PPA00264 I
Ppa-nhr-3 Pristionchus pacificus PPA28597 I
PTRK_0000446300 Parastrongyloides trichosuri PTRK_0000446300 I
Pvit_13689 Pogona vitticeps Pvit_13689 I
RPRC002557 Rhodnius prolixus RPRC002557 I
RPRC007025 Rhodnius prolixus RPRC007025 I
RSKR_0000698500 Rhabditophanes kr3021 RSKR_0000698500 I
Sakowv30007027m.g Saccoglossus kowalevskii Sakowv30007027m.g I
SBAD_0000006401 Soboliphyme baturini SBAD_0000006401 I
scaffold296-EXSNAP2012.8 Pristionchus exspectatus scaffold296-EXSNAP2012.8 I
scaffold395-EXSNAP2012.23 Pristionchus exspectatus scaffold395-EXSNAP2012.23 I
SMAR005628 Strigamia maritima SMAR005628 I
SMAR006008 Strigamia maritima SMAR006008 I
Smp_167770 Schistosoma mansoni Smp_167770 I
SMRZ_0000841101 Schistosoma margrebowiei SMRZ_0000841101 I
SMTD_0001566201 Schistosoma mattheei SMTD_0001566201 I
SMU15015045 Schmidtea mediterranea SMU15015045 I
SMU15029049 Schmidtea mediterranea SMU15029049 I
SMU15038222 Schmidtea mediterranea SMU15038222 I
SMUV_0000245701 Syphacia muris SMUV_0000245701 I
snap_masked-nMf.1.1.scaf29070-processed-gene-0.1 Meloidogyne floridensis snap_masked-nMf.1.1.scaf29070-processed-gene-0.1 I
SPAL_0001117000 Strongyloides papillosus SPAL_0001117000 I
SPU_014405 Strongylocentrotus purpuratus SPU_014405 I
SSTP_0000090600 Strongyloides stercoralis SSTP_0000090600 I
SVE_0933400 Strongyloides venezuelensis SVE_0933400 I
TC009378 Tribolium castaneum TC009378 I
TCLT_0000456401 Thelazia callipaeda TCLT_0000456401 I
TCNE_0001716001 Toxocara canis TCNE_0001716001 I
TELCIR_21617 Teladorsagia circumcincta TELCIR_21617 I
tetur01g11040 Tetranychus urticae tetur01g11040 I
tetur08g01210 Tetranychus urticae tetur08g01210 I
TRE_0000223201 Trichobilharzia regenti TRE_0000223201 I
TTRE_0000600201 Trichuris trichiura TTRE_0000600201 I
WBGene00240517 Onchocerca volvulus WBGene00240517 I
WUBG_05086 Wuchereria bancrofti WUBG_05086 I