CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra013519
(
Brassica rapa
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
Bra013519
T031420_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DYT1
M02654_2.00
Arabidopsis thaliana
TCACGTGWYTBRYK
MRYVARWCACGTGA
SELEX
Mathelier et al.(2014)
MA0580.1
0.894
0.980
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra013519.1-P
bHLH
108
156
KSPNLEAERRRREKLHGRLMALRSHVPIVTNMTKASIVEDAITYIGELQ
Links
Other
bHLH
family TFs
Other
Brassica rapa
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00019p00254380
Amborella trichopoda
AMTR_s00019p00254380
I
0.845
Bo1g024080
Brassica oleracea
Bo1g024080
I
0.884
Bo3g162600
Brassica oleracea
Bo3g162600
I
0.914
Bostr.10689s0082
Boechera stricta
Bostr.10689s0082
I
0.914
Cagra.1062s0003
Capsella grandiflora
Cagra.1062s0003
I
0.870
Carubv10007380m.g
Capsella rubella
Carubv10007380m.g
I
0.870
chr4.CM1616.440.nc
Lotus japonicus
chr4.CM1616.440.nc
I
0.855
DYT1
Arabidopsis thaliana
AT4G21330
D
0.894
DYT1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_7001824
I
0.914
GLYMA13G32370
Glycine max
GLYMA13G32370
I
0.855
GLYMA15G06950
Glycine max
GLYMA15G06950
I
0.855
LjT46I09.60.nd
Lotus japonicus
LjT46I09.60.nd
I
0.855
MTR_4g091910
Medicago truncatula
MTR_4g091910
I
0.881
orange1.1g042649m.g
Citrus sinensis
orange1.1g042649m.g
I
0.855
Thhalv10027186m.g
Eutrema salsugineum
Thhalv10027186m.g
I
0.894