DYT1 (Arabidopsis lyrata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 fgenesh1_pg.C_scaffold_7001824 T039087_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DYT1
M02654_2.00 		Arabidopsis thaliana
TCACGTGWYTBRYK
MRYVARWCACGTGA		 SELEX
Mathelier et al.(2014)
MA0580.1 		0.894 0.980
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_7001824 bHLH 30 78

Links

Other bHLH family TFs
Other Arabidopsis lyrata TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g162600 Brassica oleracea Bo3g162600 I 0.914
Bra013519 Brassica rapa Bra013519 I 0.914
Bostr.10689s0082 Boechera stricta Bostr.10689s0082 I 0.914
DYT1 Arabidopsis thaliana AT4G21330 D 0.894
Thhalv10027186m.g Eutrema salsugineum Thhalv10027186m.g I 0.894
Bo1g024080 Brassica oleracea Bo1g024080 I 0.884
MTR_4g091910 Medicago truncatula MTR_4g091910 I 0.881
Cagra.1062s0003 Capsella grandiflora Cagra.1062s0003 I 0.870
Carubv10007380m.g Capsella rubella Carubv10007380m.g I 0.870
GLYMA13G32370 Glycine max GLYMA13G32370 I 0.855
GLYMA15G06950 Glycine max GLYMA15G06950 I 0.855
orange1.1g042649m.g Citrus sinensis orange1.1g042649m.g I 0.855
chr4.CM1616.440.nc Lotus japonicus chr4.CM1616.440.nc I 0.855
LjT46I09.60.nd Lotus japonicus LjT46I09.60.nd I 0.855
AMTR_s00019p00254380 Amborella trichopoda AMTR_s00019p00254380 I 0.845