Myotis_brandtii_Tcf4_10017301 (Myotis brandtii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Myotis_brandtii_Tcf4_10017301 T047476_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.914 1.000
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.914 1.000
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.914 1.000
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.914 1.000
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.914 1.000
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.914 1.000
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.914 1.000
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.914 1.000
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.912 0.962
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.912 0.962
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.912 0.962
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.912 0.962
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.912 0.962
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.912 0.962
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.912 0.962
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.912 0.962
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.912 0.962
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.912 0.962
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.912 0.962
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.912 0.962
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.912 0.885
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.912 0.885
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.912 0.885
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.884 0.923
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.884 0.923
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.884 0.923
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.884 0.885
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.884 0.885
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.884 0.885
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.884 0.885
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.884 0.885
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.884 0.885
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.884 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_Tcf4_10017301 bHLH 409 462

Links

Other bHLH family TFs
Other Myotis brandtii TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28179.m000457 Ricinus communis 28179.m000457 N
29596.m000688 Ricinus communis 29596.m000688 N
Aquca_010_00033 Aquilegia coerulea Aquca_010_00033 N
BGIOSGA011499 Oryza indica BGIOSGA011499 N
BGIOSGA023624 Oryza indica BGIOSGA023624 N
BGIOSGA031474 Oryza indica BGIOSGA031474 N
bHLH093 Arabidopsis lyrata fgenesh2_kg.8__2611__AT5G65640.1 N
BHLH61 Arabidopsis thaliana AT5G10570 N
BHLH93 Arabidopsis thaliana AT5G65640 N
Bo2g168250 Brassica oleracea Bo2g168250 N
Bo3g097890 Brassica oleracea Bo3g097890 N
Bo9g171940 Brassica oleracea Bo9g171940 N
Bostr.0568s0223 Boechera stricta Bostr.0568s0223 N
Bostr.13175s0042 Boechera stricta Bostr.13175s0042 N
Bra024404 Brassica rapa Bra024404 N
Bra031852 Brassica rapa Bra031852 N
BRADI1G30000 Brachypodium distachyon BRADI1G30000 N
BRADI1G76030 Brachypodium distachyon BRADI1G76030 N
Cagra.0917s0023 Capsella grandiflora Cagra.0917s0023 N
Cagra.1085s0002 Capsella grandiflora Cagra.1085s0002 N
Carubv10001486m.g Capsella rubella Carubv10001486m.g N
Carubv10026606m.g Capsella rubella Carubv10026606m.g N
cassava1707.valid.m1 Manihot esculenta cassava1707.valid.m1 N
cassava20174.m1 Manihot esculenta cassava20174.m1 N
cassava35909.valid.m1 Manihot esculenta cassava35909.valid.m1 N
cassava42105.valid.m1 Manihot esculenta cassava42105.valid.m1 N
Ca_04981 Cicer arietinum Ca_04981 N
Ca_11531 Cicer arietinum Ca_11531 N
chr2.CM0177.460.nc Lotus japonicus chr2.CM0177.460.nc N
chr2.CM0504.20.nd Lotus japonicus chr2.CM0504.20.nd N
Ciclev10001683m.g Citrus clementina Ciclev10001683m.g N
Ciclev10025967m.g Citrus clementina Ciclev10025967m.g N
Cla014300 Citrullus lanatus Cla014300 N
Cla022518 Citrullus lanatus Cla022518 N
Cla023435 Citrullus lanatus Cla023435 N
Cucsa.103760 Cucumis sativus Cucsa.103760 N
Cucsa.160860 Cucumis sativus Cucsa.160860 N
Cucsa.312190 Cucumis sativus Cucsa.312190 N
Eucgr.F00459 Eucalyptus grandis Eucgr.F00459 N
Eucgr.F02171 Eucalyptus grandis Eucgr.F02171 N
Eucgr.I00608 Eucalyptus grandis Eucgr.I00608 N
evm.TU.supercontig_129.19 Carica papaya evm.TU.supercontig_129.19 N
evm.TU.supercontig_177.1 Carica papaya evm.TU.supercontig_177.1 N
F775_00539 Aegilops tauschii F775_00539 N
fgenesh2_kg.6__1024__AT5G10570.1 Arabidopsis lyrata fgenesh2_kg.6__1024__AT5G10570.1 N
gene05560-v1.0-hybrid Fragaria vesca gene05560-v1.0-hybrid N
gene26895-v1.0-hybrid Fragaria vesca gene26895-v1.0-hybrid N
GLYMA01G02390 Glycine max GLYMA01G02390 N
GLYMA02G38240 Glycine max GLYMA02G38240 N
GLYMA04G09580 Glycine max GLYMA04G09580 N
GLYMA06G09670 Glycine max GLYMA06G09670 N
GLYMA08G37240 Glycine max GLYMA08G37240 N
GLYMA09G33590 Glycine max GLYMA09G33590 N
GLYMA14G36370 Glycine max GLYMA14G36370 N
Gorai.002G137900 Gossypium raimondii Gorai.002G137900 N
Gorai.003G035900 Gossypium raimondii Gorai.003G035900 N
Gorai.007G229900 Gossypium raimondii Gorai.007G229900 N
Gorai.009G226200 Gossypium raimondii Gorai.009G226200 N
Gorai.010G031800 Gossypium raimondii Gorai.010G031800 N
GRMZM2G128807 Zea mays GRMZM2G128807 N
GRMZM2G173372 Zea mays GRMZM2G173372 N
GRMZM2G435015 Zea mays GRMZM2G435015 N
GSMUA_Achr1G26300_001 Musa acuminata GSMUA_Achr1G26300_001 N
GSMUA_Achr7G03930_001 Musa acuminata GSMUA_Achr7G03930_001 N
GSMUA_Achr8G34120_001 Musa acuminata GSMUA_Achr8G34120_001 N
GSMUA_AchrUn_randomG16890_001 Musa acuminata GSMUA_AchrUn_randomG16890_001 N
LjSGA_043777.1 Lotus japonicus LjSGA_043777.1 N
LPERR03G02580 Leersia perrieri LPERR03G02580 N
LPERR06G23280 Leersia perrieri LPERR06G23280 N
Lus10002160.g Linum usitatissimum Lus10002160.g N
Lus10039631.g Linum usitatissimum Lus10039631.g N
MDP0000175282 Malus domestica MDP0000175282 N
MDP0000178782 Malus domestica MDP0000178782 N
MDP0000312274 Malus domestica MDP0000312274 N
MDP0000603926 Malus domestica MDP0000603926 N
MDP0000644807 Malus domestica MDP0000644807 N
mgf011848m Mimulus guttatus mgf011848m N
mgf017272m Mimulus guttatus mgf017272m N
MLOC_55768 Hordeum vulgare MLOC_55768 N
MTR_3g111290 Medicago truncatula MTR_3g111290 N
MTR_5g030770 Medicago truncatula MTR_5g030770 N
OB03G12820 Oryza brachyantha OB03G12820 N
OBART06G27800 Oryza barthii OBART06G27800 N
OBART06G27860 Oryza barthii OBART06G27860 N
OBART10G17440 Oryza barthii OBART10G17440 N
OGLUM03G02750 Oryza glumaepatula OGLUM03G02750 N
OGLUM06G29220 Oryza glumaepatula OGLUM06G29220 N
OGLUM10G17470 Oryza glumaepatula OGLUM10G17470 N
OLONG_005983 Oryza longistaminata OLONG_005983 N
OMERI03G02800 Oryza meridionalis OMERI03G02800 N
OMERI06G27810 Oryza meridionalis OMERI06G27810 N
OMERI10G13920 Oryza meridionalis OMERI10G13920 N
ONIVA03G02430 Oryza nivara ONIVA03G02430 N
ONIVA06G30800 Oryza nivara ONIVA06G30800 N
ONIVA10G19680 Oryza nivara ONIVA10G19680 N
OPUNC03G02570 Oryza punctata OPUNC03G02570 N
OPUNC06G25390 Oryza punctata OPUNC06G25390 N
OPUNC10G15730 Oryza punctata OPUNC10G15730 N
orange1.1g018897m.g Citrus sinensis orange1.1g018897m.g N
orange1.1g038389m.g Citrus sinensis orange1.1g038389m.g N
ORGLA03G0026100 Oryza glaberrima ORGLA03G0026100 N
ORGLA10G0124500 Oryza glaberrima ORGLA10G0124500 N
ORUFI03G02540 Oryza rufipogon ORUFI03G02540 N
ORUFI06G29810 Oryza rufipogon ORUFI06G29810 N
ORUFI10G18500 Oryza rufipogon ORUFI10G18500 N
OS03G0135700 Oryza sativa OS03G0135700 N
OS10G0544200 Oryza sativa OS10G0544200 N
Pavir.Ia04450 Panicum virgatum Pavir.Ia04450 N
Pavir.Ib00206 Panicum virgatum Pavir.Ib00206 N
Pavir.J18000 Panicum virgatum Pavir.J18000 N
Pavir.J18595 Panicum virgatum Pavir.J18595 N
Pavir.J25463 Panicum virgatum Pavir.J25463 N
PDK_20s1771821g001 Phoenix dactylifera PDK_20s1771821g001 N
PGSC0003DMG400002056 Solanum tuberosum PGSC0003DMG400002056 N
PGSC0003DMG400006394 Solanum tuberosum PGSC0003DMG400006394 N
PGSC0003DMG400010388 Solanum tuberosum PGSC0003DMG400010388 N
PGSC0003DMG400030616 Solanum tuberosum PGSC0003DMG400030616 N
PK12634.1 Cannabis sativa PK12634.1 N
Pm002283 Prunus mume Pm002283 N
Pm004330 Prunus mume Pm004330 N
POPTR_0002s10910 Populus trichocarpa POPTR_0002s10910 N
PRUPE_ppa007656mg Prunus persica PRUPE_ppa007656mg N
PRUPE_ppa016514mg Prunus persica PRUPE_ppa016514mg N
SapurV1A.0004s0900 Salix purpurea SapurV1A.0004s0900 N
Sb01g047940 Sorghum bicolor Sb01g047940 N
Sb10g030470 Sorghum bicolor Sb10g030470 N
SELMODRAFT_77288 Selaginella moellendorffii SELMODRAFT_77288 N
Si006877m.g Setaria italica Si006877m.g N
Si036470m.g Setaria italica Si036470m.g N
Solyc02g063430.2 Solanum lycopersicum Solyc02g063430.2 N
Solyc02g091690.2 Solanum lycopersicum Solyc02g091690.2 N
Solyc12g088130.1 Solanum lycopersicum Solyc12g088130.1 N
TCM_000915 Theobroma cacao TCM_000915 N
TCM_034574 Theobroma cacao TCM_034574 N
Thhalv10004732m.g Eutrema salsugineum Thhalv10004732m.g N
Traes_3AS_1FD49785C Triticum aestivum Traes_3AS_1FD49785C N
Traes_4BL_0F2281616 Triticum aestivum Traes_4BL_0F2281616 N
Traes_4DL_0075CCAD9 Triticum aestivum Traes_4DL_0075CCAD9 N
Traes_4DL_1C0F38900 Triticum aestivum Traes_4DL_1C0F38900 N
Traes_4DL_5851FBD0C Triticum aestivum Traes_4DL_5851FBD0C N
Traes_4DL_ACF3BE9C5 Triticum aestivum Traes_4DL_ACF3BE9C5 N
Traes_7DL_67FF12B6A Triticum aestivum Traes_7DL_67FF12B6A N
TRIUR3_23651 Triticum urartu TRIUR3_23651 N
TRIUR3_29035 Triticum urartu TRIUR3_29035 N
VIT_00s1312g00010 Vitis vinifera VIT_00s1312g00010 N
VIT_17s0000g03550 Vitis vinifera VIT_17s0000g03550 N
VIT_18s0001g08040 Vitis vinifera VIT_18s0001g08040 N