Carubv10020804m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10020804m.g T049419_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT4G25400
M09786_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT4G25400_01 		0.850 0.635
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020804m bHLH 80 132

Links

Other bHLH family TFs
Other Capsella rubella TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT4G25400 Arabidopsis thaliana AT4G25400 D 0.850
AT5G51780 Arabidopsis thaliana AT5G51780 I 0.850
BHLH125 Arabidopsis thaliana AT1G62975 I 0.914
Bo7g110280 Brassica oleracea Bo7g110280 I 0.850
Bostr.13671s0206 Boechera stricta Bostr.13671s0206 I 0.862
Bostr.22157s0026 Boechera stricta Bostr.22157s0026 I 0.914
Bostr.7867s0349 Boechera stricta Bostr.7867s0349 I 0.850
Cagra.1670s0006 Capsella grandiflora Cagra.1670s0006 I 0.914
fgenesh2_kg.2__186__AT1G62975.1 Arabidopsis lyrata fgenesh2_kg.2__186__AT1G62975.1 I 0.914
fgenesh2_kg.8__1059__AT5G51780.1 Arabidopsis lyrata fgenesh2_kg.8__1059__AT5G51780.1 I 0.850
Thhalv10009922m.g Eutrema salsugineum Thhalv10009922m.g I 0.863
Thhalv10026341m.g Eutrema salsugineum Thhalv10026341m.g I 0.850