Pavir.Ca00825 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ca00825 T050707_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK15505.1
M01125_2.00 		Cannabis sativa
NRCACGTGYN
NRCACGTGYN		 PBM
Lambert et al.(2019)
pTH10268 		0.861 0.633
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00825.1.p bHLH 184 232

Links

Other bHLH family TFs
Other Panicum virgatum TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29912.m005337 Ricinus communis 29912.m005337 I 0.893
Al_scaffold_0008_2143 Arabidopsis lyrata Al_scaffold_0008_2143 I 0.849
AMTR_s00064p00208400 Amborella trichopoda AMTR_s00064p00208400 I 0.861
AT5G56960 Arabidopsis thaliana AT5G56960 I 0.849
BGIOSGA002941 Oryza indica BGIOSGA002941 N 0.860
BGIOSGA033976 Oryza indica BGIOSGA033976 I 0.903
Bostr.26833s0565 Boechera stricta Bostr.26833s0565 I 0.849
Bra035639 Brassica rapa Bra035639 I 0.849
Cagra.1569s0004 Capsella grandiflora Cagra.1569s0004 I 0.849
Carubv10026331m.g Capsella rubella Carubv10026331m.g I 0.849
cassava25701.m1 Manihot esculenta cassava25701.m1 I 0.866
cassava46879.m1 Manihot esculenta cassava46879.m1 I 0.893
Ciclev10007937m.g Citrus clementina Ciclev10007937m.g I 0.873
Cla017100 Citrullus lanatus Cla017100 I 0.873
Cucsa.117060 Cucumis sativus Cucsa.117060 I 0.873
Eucgr.C03476 Eucalyptus grandis Eucgr.C03476 I 0.873
gene12658-v1.0-hybrid Fragaria vesca gene12658-v1.0-hybrid I 0.849
GRMZM2G132550 Zea mays GRMZM2G132550 N 0.842
GRMZM2G175480 Zea mays GRMZM2G175480 N 0.890
GSMUA_Achr6G00900_001 Musa acuminata GSMUA_Achr6G00900_001 I 0.873
LPERR05G05410 Leersia perrieri LPERR05G05410 I 0.903
Lus10017152.g Linum usitatissimum Lus10017152.g N 0.842
MDP0000119495 Malus domestica MDP0000119495 I 0.872
MDP0000252899 Malus domestica MDP0000252899 I 0.872
MDP0000782908 Malus domestica MDP0000782908 I 0.873
mgf018190m Mimulus guttatus mgf018190m I 0.848
OB05G15870 Oryza brachyantha OB05G15870 I 0.903
OBART05G06380 Oryza barthii OBART05G06380 I 0.903
OGLUM01G06710 Oryza glumaepatula OGLUM01G06710 N 0.860
OGLUM05G06690 Oryza glumaepatula OGLUM05G06690 I 0.903
ONIVA01G07090 Oryza nivara ONIVA01G07090 N 0.860
ONIVA05G07120 Oryza nivara ONIVA05G07120 I 0.903
OPUNC05G05910 Oryza punctata OPUNC05G05910 I 0.883
orange1.1g008967m.g Citrus sinensis orange1.1g008967m.g I 0.873
ORGLA05G0058200 Oryza glaberrima ORGLA05G0058200 I 0.903
ORUFI05G06870 Oryza rufipogon ORUFI05G06870 I 0.903
OS05G0199800 Oryza sativa OS05G0199800 I 0.903
Pavir.J01638 Panicum virgatum Pavir.J01638 I 0.914
PDK_20s1427741g002 Phoenix dactylifera PDK_20s1427741g002 I 0.860
PGSC0003DMG400000335 Solanum tuberosum PGSC0003DMG400000335 I 0.858
PGSC0003DMG400022043 Solanum tuberosum PGSC0003DMG400022043 I 0.882
PK15505.1 Cannabis sativa PK15505.1 D 0.861
Pm027191 Prunus mume Pm027191 I 0.849
POPTR_0006s15310 Populus trichocarpa POPTR_0006s15310 I 0.893
PRUPE_ppa020972mg Prunus persica PRUPE_ppa020972mg I 0.849
SapurV1A.0108s0270 Salix purpurea SapurV1A.0108s0270 I 0.863
Sb09g006196 Sorghum bicolor Sb09g006196 N 0.866
Si024546m.g Setaria italica Si024546m.g I 0.914
Solyc07g039570.2 Solanum lycopersicum Solyc07g039570.2 I 0.882
Thhalv10013360m.g Eutrema salsugineum Thhalv10013360m.g I 0.849
VIT_11s0016g02070 Vitis vinifera VIT_11s0016g02070 I 0.873