ENSXMAG00000015353 (Xiphophorus maculatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSXMAG00000015353 T113987_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.804 0.877
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.804 0.877
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.804 0.877
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.804 0.877
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.794 0.921
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.794 0.921
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.794 0.921
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.794 0.921
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.788 0.842
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.788 0.842
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.788 0.842
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.784 0.877
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.784 0.877
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.784 0.877
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000015377 C2H2 ZF 148 170
ENSXMAP00000015377 C2H2 ZF 179 201
ENSXMAP00000015377 C2H2 ZF 205 227
ENSXMAP00000015377 C2H2 ZF 233 255
ENSXMAP00000015377 C2H2 ZF 261 282

Links

Other C2H2 ZF family TFs
Other Xiphophorus maculatus TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29711.m000322 Ricinus communis 29711.m000322 I
29830.m001386 Ricinus communis 29830.m001386 I
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I
BGIOSGA008112 Oryza indica BGIOSGA008112 I
bHLH11 Vitis vinifera VIT_04s0023g03430 I
bHLH121 Vitis vinifera VIT_03s0038g01790 I
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I
Cla014511 Citrullus lanatus Cla014511 I
Cucsa.043580 Cucumis sativus Cucsa.043580 I
Cucsa.169240 Cucumis sativus Cucsa.169240 I
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I
GLYMA08G15740 Glycine max GLYMA08G15740 I
GLYMA12G02740 Glycine max GLYMA12G02740 I
GLYMA15G29630 Glycine max GLYMA15G29630 I
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I
Lus10028456.g Linum usitatissimum Lus10028456.g I
Lus10041908.g Linum usitatissimum Lus10041908.g I
MDP0000275844 Malus domestica MDP0000275844 I
mgf017107m Mimulus guttatus mgf017107m I
MTR_4g075480 Medicago truncatula MTR_4g075480 I
OPUNC02G13570 Oryza punctata OPUNC02G13570 I
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I
OS02G0433600 Oryza sativa OS02G0433600 I
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I
PK18401.1 Cannabis sativa PK18401.1 D
Pm021043 Prunus mume Pm021043 I
Pm026758 Prunus mume Pm026758 I
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I
TCM_000204 Theobroma cacao TCM_000204 I
TCM_006692 Theobroma cacao TCM_006692 I