Brh_R003425 (Buceros rhinoceros)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Brh_R003425 T133524_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zbtb1
M00775_2.00 		Mus musculus
NHMMCGCRHN
NDYGCGKKDN		 PBM
Weirauch et al.(2013)
pTH2366 		0.821 0.982
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R003425 C2H2 ZF 532 553
Brh_R003425 C2H2 ZF 572 598
Brh_R003425 C2H2 ZF 604 626
Brh_R003425 C2H2 ZF 660 682
Brh_R003425 C2H2 ZF 684 707

Links

Other C2H2 ZF family TFs
Other Buceros rhinoceros TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29742.m001400 Ricinus communis 29742.m001400 I
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I
Bo5g002600 Brassica oleracea Bo5g002600 I
Bo8g117810 Brassica oleracea Bo8g117810 I
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I
Bra032630 Brassica rapa Bra032630 I
Bra033274 Brassica rapa Bra033274 I
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I
Carubv10010347m.g Capsella rubella Carubv10010347m.g I
cassava32974.m1 Manihot esculenta cassava32974.m1 I
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I
Ca_17638 Cicer arietinum Ca_17638 I
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I
Cla012665 Citrullus lanatus Cla012665 I
Cucsa.237150 Cucumis sativus Cucsa.237150 I
ERF023 Arabidopsis thaliana AT1G01250 D
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I
GLYMA03G41910 Glycine max GLYMA03G41910 I
GLYMA07G06080 Glycine max GLYMA07G06080 I
GLYMA16G02680 Glycine max GLYMA16G02680 I
GLYMA19G44580 Glycine max GLYMA19G44580 I
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I
mgf020568m Mimulus guttatus mgf020568m I
MTR_7g117690 Medicago truncatula MTR_7g117690 I
MTR_8g027465 Medicago truncatula MTR_8g027465 I
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I
PGSC0003DMG400007036 Solanum tuberosum PGSC0003DMG400007036 N
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I
PK15554.1 Cannabis sativa PK15554.1 I
Pm018354 Prunus mume Pm018354 I
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I
TCM_005130 Theobroma cacao TCM_005130 I
TCM_036269 Theobroma cacao TCM_036269 I
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I