Gfo_R008822 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R008822 T135790_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KLF13
M02903_2.00 		Homo sapiens
DDRMCACGCCCCYTTNDK
MHNAARGGGGCGTGKYHH		 SELEX
Jolma et al.(2013)
KLF13_1 		0.800 0.942
KLF13
M04537_2.00 		Homo sapiens
NRCCACRCCCMCN
NGKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_eDBD_HT-SELEX 		0.800 0.942
KLF13
M04539_2.00 		Homo sapiens
NRCCACRCCCMYN
NRKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_FL_HT-SELEX 		0.800 0.942
KLF13
M04538_2.00 		Homo sapiens
NRCCACRCCCMCH
DGKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_eDBD_Methyl-HT-SELEX 		0.800 0.942
KLF13
M04540_2.00 		Homo sapiens
NRCCACRCCCMCH
DGKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_FL_Methyl-HT-SELEX 		0.800 0.942
Klf9
M00777_2.00 		Mus musculus
NCCGTTAN
NTAACGGN		 PBM
Weirauch et al.(2013)
pTH2353 		0.765 0.841
KLF9
M08088_2.00 		Homo sapiens
NVMCACACCCMBN
NVKGGGTGTGKBN		 ChIP-seq
Mathelier et al.(2014)
MA1107.1 		0.765 0.841
KLF9
M08880_2.00 		Homo sapiens
NGCCMCGCCCMCBBS
SVVGKGGGCGKGGCN		 Misc
Kulakovskiy et al.(2013)
KLF9_HUMAN.H11MO.0.C 		0.765 0.841
Klf9
M10345_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BTEB1_01 		0.765 0.841
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R008822 C2H2 ZF 155 179
Gfo_R008822 C2H2 ZF 185 209
Gfo_R008822 C2H2 ZF 215 237

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015091 Calypte anna Aan_R015091 I 0.827
Aan_R015392 Calypte anna Aan_R015392 I 0.758
Afo_R014961 Aptenodytes forsteri Afo_R014961 I 0.827
Afo_R015752 Aptenodytes forsteri Afo_R015752 I 0.758
Alligator_sinensis_CCG010361.1 Alligator sinensis Alligator_sinensis_CCG010361.1 I 0.765
Alligator_sinensis_CCG017491.1 Alligator sinensis Alligator_sinensis_CCG017491.1 I 0.758
CapteG131091 Capitella teleta CapteG131091 I 0.759
Cmyd_10017062 Chelonia mydas Cmyd_10017062 I 0.765
DAPPUDRAFT_312628 Daphnia pulex DAPPUDRAFT_312628 I 0.770
ENSACAG00000003119 Anolis carolinensis ENSACAG00000003119 I 0.804
ENSAMEG00000007114 Ailuropoda melanoleuca ENSAMEG00000007114 I 0.765
ENSAMEG00000011355 Ailuropoda melanoleuca ENSAMEG00000011355 I 0.758
ENSAMXG00000000331 Astyanax mexicanus ENSAMXG00000000331 I 0.775
ENSAMXG00000011768 Astyanax mexicanus ENSAMXG00000011768 I 0.758
ENSAMXG00000019220 Astyanax mexicanus ENSAMXG00000019220 N 0.759
ENSAPLG00000006681 Anas platyrhynchos ENSAPLG00000006681 I 0.804
ENSAPLG00000009146 Anas platyrhynchos ENSAPLG00000009146 I 0.758
ENSBTAP00000021593-D1 Bos grunniens ENSBTAP00000021593-D1 I 0.765
ENSCPOG00000005302 Cavia porcellus ENSCPOG00000005302 I 0.765
ENSCSAG00000006853 Chlorocebus sabaeus ENSCSAG00000006853 I 0.800
ENSCSAG00000008358 Chlorocebus sabaeus ENSCSAG00000008358 I 0.765
ENSFALG00000006648 Ficedula albicollis ENSFALG00000006648 I 0.771
ENSGACG00000010739 Gasterosteus aculeatus ENSGACG00000010739 I 0.775
ENSGALG00000026590 Gallus gallus ENSGALG00000026590 I 0.820
ENSGMOG00000002059 Gadus morhua ENSGMOG00000002059 I 0.775
ENSGMOG00000017411 Gadus morhua ENSGMOG00000017411 I 0.765
ENSLACG00000004995 Latimeria chalumnae ENSLACG00000004995 I 0.765
ENSLACG00000010260 Latimeria chalumnae ENSLACG00000010260 I 0.758
ENSLACG00000018298 Latimeria chalumnae ENSLACG00000018298 I 0.791
ENSLOCG00000006468 Lepisosteus oculatus ENSLOCG00000006468 I 0.759
ENSLOCG00000014806 Lepisosteus oculatus ENSLOCG00000014806 I 0.775
ENSMMUG00000000225 Macaca mulatta ENSMMUG00000000225 I 0.765
ENSMPUG00000009506 Mustela putorius furo ENSMPUG00000009506 I 0.765
ENSMPUG00000013287 Mustela putorius furo ENSMPUG00000013287 I 0.758
ENSNLEG00000000826 Nomascus leucogenys ENSNLEG00000000826 I 0.765
ENSNLEG00000007555 Nomascus leucogenys ENSNLEG00000007555 I 0.800
ENSOANG00000010450 Ornithorhynchus anatinus ENSOANG00000010450 I 0.768
ENSOARG00000012896 Ovis aries ENSOARG00000012896 I 0.765
ENSOARG00000015319 Ovis aries ENSOARG00000015319 I 0.758
ENSOARG00000016409 Ovis aries ENSOARG00000016409 I 0.800
ENSOGAG00000026529 Otolemur garnettii ENSOGAG00000026529 I 0.800
ENSONIG00000015310 Oreochromis niloticus ENSONIG00000015310 I 0.775
ENSP00000307023-D1 Bos grunniens ENSP00000307023-D1 I 0.758
ENSP00000366330 Macaca fascicularis ENSP00000366330 I 0.765
ENSPANG00000025104 Papio anubis ENSPANG00000025104 I 0.765
ENSPFOG00000004556 Poecilia formosa ENSPFOG00000004556 I 0.771
ENSPPYG00000019284 Pongo abelii ENSPPYG00000019284 I 0.765
ENSPSIG00000009426 Pelodiscus sinensis ENSPSIG00000009426 I 0.765
ENSPSIG00000010816 Pelodiscus sinensis ENSPSIG00000010816 I 0.758
ENSPSIG00000014849 Pelodiscus sinensis ENSPSIG00000014849 I 0.804
ENSSHAG00000011337 Sarcophilus harrisii ENSSHAG00000011337 I 0.765
ENSSTOG00000000238 Ictidomys tridecemlineatus ENSSTOG00000000238 I 0.765
ENSSTOG00000022758 Ictidomys tridecemlineatus ENSSTOG00000022758 I 0.800
ENSTRUG00000000453 Takifugu rubripes ENSTRUG00000000453 I 0.765
ENSTSYG00000008257 Tarsius syrichta ENSTSYG00000008257 I 0.765
ENSXMAG00000003301 Xiphophorus maculatus ENSXMAG00000003301 I 0.771
Gfo_R015265 Geospiza fortis Gfo_R015265 I 0.768
KLF11 Bos taurus ENSBTAG00000046218 I 0.758
KLF11 Canis familiaris ENSCAFG00000003405 I 0.758
KLF11 Gallus gallus ENSGALG00000016440 I 0.758
KLF11 Meleagris gallopavo ENSMGAG00000014008 I 0.758
KLF11 Taeniopygia guttata ENSTGUG00000013041 I 0.774
klf11 Xenopus tropicalis XB-GENE-956858 I 0.758
klf11.L Xenopus laevis XB-GENE-956865 I 0.758
klf11.S Xenopus laevis XB-GENE-17345045 I 0.758
klf11b Danio rerio ENSDARG00000013794 I 0.758
KLF13 Callithrix jacchus ENSCJAG00000017617 I 0.800
klf13 Danio rerio ENSDARG00000061368 I 0.775
KLF13 Echinops telfairi ENSETEG00000014330 I 0.787
KLF13 Homo sapiens ENSG00000169926 D 0.800
KLF13 Meleagris gallopavo ENSMGAG00000004699 I 0.820
KLF13 Monodelphis domestica ENSMODG00000011740 I 0.784
Klf13 Mus musculus ENSMUSG00000052040 I 0.800
KLF13 Oryctolagus cuniculus ENSOCUG00000011101 I 0.787
klf13 Oryzias latipes ENSORLG00000007542 I 0.775
KLF13 Procavia capensis ENSPCAG00000009647 I 0.800
KLF13 Pan troglodytes ENSPTRG00000006860 I 0.800
KLF13 Sus scrofa ENSSSCG00000026006 I 0.800
KLF13 Taeniopygia guttata ENSTGUG00000005470 I 0.827
klf13 Tetraodon nigroviridis ENSTNIG00000008397 I 0.771
klf13 Takifugu rubripes ENSTRUG00000011759 I 0.770
klf13 Xenopus tropicalis XB-GENE-479837 I 0.812
KLF9 Bos taurus ENSBTAG00000016229 I 0.765
KLF9 Callithrix jacchus ENSCJAG00000001575 I 0.765
KLF9 Dasypus novemcinctus ENSDNOG00000018839 I 0.765
KLF9 Equus caballus ENSECAG00000024925 I 0.765
KLF9 Homo sapiens ENSG00000119138 D 0.765
klf9 Gasterosteus aculeatus ENSGACG00000010668 I 0.761
KLF9 Gallus gallus ENSGALG00000027374 I 0.765
KLF9 Gorilla gorilla ENSGGOG00000025900 I 0.765
KLF9 Loxodonta africana ENSLAFG00000027506 I 0.765
KLF9 Microcebus murinus ENSMICG00000001056 I 0.765
KLF9 Myotis lucifugus ENSMLUG00000002809 I 0.765
KLF9 Monodelphis domestica ENSMODG00000002760 I 0.765
Klf9 Mus musculus ENSMUSG00000033863 D 0.765
KLF9 Ornithorhynchus anatinus ENSOANG00000005024 I 0.765
KLF9 Oryctolagus cuniculus ENSOCUG00000006343 I 0.765
KLF9 Otolemur garnettii ENSOGAG00000030356 I 0.765
KLF9 Procavia capensis ENSPCAG00000003811 I 0.765
KLF9 Pan troglodytes ENSPTRG00000040619 I 0.765
KLF9 Pteropus vampyrus ENSPVAG00000005970 I 0.765
Klf9 Rattus norvegicus ENSRNOG00000014215 I 0.765
KLF9 Sus scrofa ENSSSCG00000021646 I 0.765
KLF9 Tupaia belangeri ENSTBEG00000007044 I 0.765
KLF9 Tursiops truncatus ENSTTRG00000001149 I 0.765
LotgiG126249 Lottia gigantea LotgiG126249 I 0.767
Myotis_brandtii_KLF9_10034438 Myotis brandtii Myotis_brandtii_KLF9_10034438 I 0.765
NEMVEDRAFT_v1g39461 Nematostella vectensis NEMVEDRAFT_v1g39461 I 0.767
Ogr16901 Ophisaurus gracilis Ogr16901 I 0.804
Ogr17781 Ophisaurus gracilis Ogr17781 I 0.765
PHUM248360 Pediculus humanus PHUM248360 I 0.760
Pvit_02178 Pogona vitticeps Pvit_02178 I 0.765
Pvit_17363 Pogona vitticeps Pvit_17363 I 0.804
SPU_023727 Strongylocentrotus purpuratus SPU_023727 N 0.758
Tal_R011003 Tyto alba Tal_R011003 I 0.827
Tal_R013154 Tyto alba Tal_R013154 I 0.758
TC000837 Tribolium castaneum TC000837 I 0.767
tetur19g01530 Tetranychus urticae tetur19g01530 I 0.756
TriadG27838 Trichoplax adhaerens TriadG27838 I 0.767