Carubv10001157m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10001157m.g T142691_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M01443_2.00 		Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN		 PBM
Najafabadi et al.(2015a)
pTH11160 		0.804 0.957
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001157m C2H2 ZF 79 103
Carubv10001157m C2H2 ZF 108 132
Carubv10001157m C2H2 ZF 138 162
Carubv10001157m C2H2 ZF 168 193
Carubv10001157m C2H2 ZF 230 255

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo00829s040 Brassica oleracea Bo00829s040 I 0.814
Bo3g023850 Brassica oleracea Bo3g023850 I 0.813
Bostr.3877s0062 Boechera stricta Bostr.3877s0062 I 0.814
Bra029186 Brassica rapa Bra029186 I 0.813
Bra035726 Brassica rapa Bra035726 I 0.814
Cagra.2657s0002 Capsella grandiflora Cagra.2657s0002 I 0.827
fgenesh2_kg.6__2821__AT4G06634.1 Arabidopsis lyrata fgenesh2_kg.6__2821__AT4G06634.1 I 0.814
Thhalv10028723m.g Eutrema salsugineum Thhalv10028723m.g I 0.812
YY1 Arabidopsis thaliana AT4G06634 D 0.804