fgenesh2_pg.scaffold_82000019 (Branchiostoma floridae)
CSL

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF09271 (LAG1-DNAbind) IPR015351 fgenesh2_pg.scaffold_82000019 T166323_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBPJ
M00735_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig2 		0.847 0.847
RBPJ
M00736_2.00 		Homo sapiens
NNNYTCHCAN
NTGDGARNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig4 		0.847 0.847
RBPJ
M00737_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL-NOTCH1 		0.847 0.847
RBPJ
M00738_2.00 		Homo sapiens
NBTCHCAN
NTGDGAVN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His_MAML1 		0.847 0.847
RBPJ
M00739_2.00 		Homo sapiens
NNBTCHCAN
NTGDGAVNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His 		0.847 0.847
RBPJ
M00740_2.00 		Homo sapiens
NNNYTCYCAN
NTGRGARNNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_Fig2 		0.847 0.847
RBPJ
M00741_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig2 		0.847 0.847
RBPJ
M00742_2.00 		Homo sapiens
NDYTCHCAB
VTGDGARHN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig5 		0.847 0.847
RBPJ
M08105_2.00 		Homo sapiens
NNTTCCCABN
NVTGGGAANN		 ChIP-seq
Mathelier et al.(2014)
MA1116.1 		0.847 0.847
RBPJ
M09020_2.00 		Homo sapiens
BTTCCCASVVN
NBBSTGGGAAV		 Misc
Kulakovskiy et al.(2013)
SUH_HUMAN.H11MO.0.A 		0.847 0.847
Rbpj
M09021_2.00 		Mus musculus
NBTTCCCASVV
BBSTGGGAAVN		 Misc
Kulakovskiy et al.(2013)
SUH_MOUSE.H11MO.0.A 		0.847 0.847
RBPJ
M10413_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_01 		0.847 0.847
RBPJ
M10414_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_Q4 		0.847 0.847
Su(H)
M10415_2.00 		Drosophila melanogaster
VGKTTCYCACRVY
RBYGTGRGAAMCB		 Transfac
Matys et al.(2006)
I$SUH_01 		0.771 0.771
Su(H)
M08455_2.00 		Drosophila melanogaster
HBHNVGKTTCYCACRV
BYGTGRGAAMCBNDVD		 COMPILED
Mathelier et al.(2014)
MA0085.1 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_82000019 CSL 61 191

Links

Other CSL family TFs
Other Branchiostoma floridae TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAB05479 Xenopus laevis AAB05479 I 0.840
AAEL006419 Aedes aegypti AAEL006419 I 0.756
AALB007981 Anopheles albimanus AALB007981 I 0.748
Aan_R011115 Calypte anna Aan_R011115 I 0.855
AARA009493 Anopheles arabiensis AARA009493 I 0.710
AATE009298 Anopheles atroparvus AATE009298 I 0.740
ACEP17167 Atta cephalotes ACEP17167 I 0.763
ACOM040639 Anopheles coluzzii ACOM040639 I 0.748
ACUA014515 Anopheles culicifacies ACUA014515 I 0.748
ACYPI009607 Acyrthosiphon pisum ACYPI009607 I 0.702
ADIR011431 Anopheles dirus ADIR011431 I 0.748
AEPI005106 Anopheles epiroticus AEPI005106 I 0.710
AFAF012186 Anopheles farauti AFAF012186 I 0.748
Afo_R009248 Aptenodytes forsteri Afo_R009248 I 0.855
AFUN007280 Anopheles funestus AFUN007280 I 0.748
AGAP008935 Anopheles gambiae AGAP008935 I 0.748
Alligator_sinensis_CCG006987.1 Alligator sinensis Alligator_sinensis_CCG006987.1 I 0.847
AMAM009373 Anopheles maculatus AMAM009373 I 0.702
AMEC017285 Anopheles melas AMEC017285 I 0.710
AMEM004324 Anopheles merus AMEM004324 I 0.748
AMIN005880 Anopheles minimus AMIN005880 I 0.748
AQUA011533 Anopheles quadriannulatus AQUA011533 I 0.750
ASIS021327 Anopheles sinensis ASIS021327 I 0.702
ASTEI01929 Anopheles stephensi ASTEI01929 I 0.740
BGIBMGA003113 Bombyx mori BGIBMGA003113 I 0.763
Brh_R001357 Buceros rhinoceros Brh_R001357 I 0.855
CapteG179039 Capitella teleta CapteG179039 I 0.779
Cflo_01916--XP_397309.1_APIME Camponotus floridanus Cflo_01916--XP_397309.1_APIME I 0.771
CGI_10018383 Crassostrea gigas CGI_10018383 I 0.817
CLEC005205 Cimex lectularius CLEC005205 I 0.748
Cmyd_10010997 Chelonia mydas Cmyd_10010997 I 0.847
CPIJ004183 Culex quinquefasciatus CPIJ004183 I 0.725
CpipJ_CPIJ004183 Culex pipiens CpipJ_CPIJ004183 I 0.725
DAPPUDRAFT_98470 Daphnia pulex DAPPUDRAFT_98470 I 0.740
ENSAMEG00000018082 Ailuropoda melanoleuca ENSAMEG00000018082 I 0.847
ENSAMXG00000010835 Astyanax mexicanus ENSAMXG00000010835 I 0.809
ENSAMXG00000011180 Astyanax mexicanus ENSAMXG00000011180 I 0.779
ENSAPLG00000007512 Anas platyrhynchos ENSAPLG00000007512 I 0.855
ENSBTAP00000004696-D1 Bos grunniens ENSBTAP00000004696-D1 I 0.847
ENSFALG00000009154 Ficedula albicollis ENSFALG00000009154 I 0.855
ENSGMOG00000004951 Gadus morhua ENSGMOG00000004951 I 0.763
ENSGMOG00000006156 Gadus morhua ENSGMOG00000006156 I 0.815
ENSLACG00000007296 Latimeria chalumnae ENSLACG00000007296 I 0.847
ENSLOCG00000009731 Lepisosteus oculatus ENSLOCG00000009731 I 0.847
ENSMPUG00000016715 Mustela putorius furo ENSMPUG00000016715 I 0.847
ENSNLEG00000016895 Nomascus leucogenys ENSNLEG00000016895 I 0.847
ENSOARG00000008166 Ovis aries ENSOARG00000008166 I 0.847
ENSONIG00000008873 Oreochromis niloticus ENSONIG00000008873 I 0.763
ENSONIG00000009281 Oreochromis niloticus ENSONIG00000009281 I 0.824
ENSP00000354528 Macaca fascicularis ENSP00000354528 I 0.847
ENSPANG00000021176 Papio anubis ENSPANG00000021176 I 0.847
ENSPFOG00000012004 Poecilia formosa ENSPFOG00000012004 I 0.832
ENSPFOG00000016494 Poecilia formosa ENSPFOG00000016494 I 0.702
ENSPPYG00000014652 Pongo abelii ENSPPYG00000014652 I 0.847
ENSPPYG00000019874 Pongo abelii ENSPPYG00000019874 I 0.702
ENSPSIG00000016822 Pelodiscus sinensis ENSPSIG00000016822 I 0.847
ENSSHAG00000003329 Sarcophilus harrisii ENSSHAG00000003329 I 0.847
ENSSTOG00000004547 Ictidomys tridecemlineatus ENSSTOG00000004547 I 0.847
ENSTSYG00000001894 Tarsius syrichta ENSTSYG00000001894 I 0.847
ENSXMAG00000009877 Xiphophorus maculatus ENSXMAG00000009877 I 0.832
ENSXMAG00000012207 Xiphophorus maculatus ENSXMAG00000012207 I 0.718
fgenesh2_pg.scaffold_60000013 Branchiostoma floridae fgenesh2_pg.scaffold_60000013 I 0.992
GA25242 Drosophila pseudoobscura FBgn0246623 I 0.771
GA25243 Drosophila pseudoobscura FBgn0246624 I 0.771
GB45655 Apis mellifera GB45655 I 0.763
GE20814 Drosophila yakuba FBgn0238107 I 0.771
GF14905 Drosophila ananassae FBgn0091930 I 0.771
Gfo_R010339 Geospiza fortis Gfo_R010339 I 0.855
GG25142 Drosophila erecta FBgn0117267 I 0.771
GH10915 Drosophila grimshawi FBgn0118396 I 0.771
GI13259 Drosophila mojavensis FBgn0136016 I 0.763
GJ11880 Drosophila virilis FBgn0199134 I 0.771
GL26026 Drosophila persimilis FBgn0163608 I 0.771
GM15894 Drosophila sechellia FBgn0170810 I 0.771
GPLIN_001569000 Globodera pallida GPLIN_001569000 I 0.824
HHAL001644-PA Halyomorpha halys HHAL001644-PA I 0.748
HMEL017244 Heliconius melpomene HMEL017244 I 0.763
Hsal_09918--XP_397309.1_APIME Harpegnathos saltator Hsal_09918--XP_397309.1_APIME I 0.763
ISCW010197 Ixodes scapularis ISCW010197 I 0.756
KGM_08407 Danaus plexippus KGM_08407 I 0.763
L798_15068 Zootermopsis nevadensis L798_15068 I 0.779
LCUP003485 Lucilia cuprina LCUP003485 I 0.763
LDEC018359 Leptinotarsa decemlineata LDEC018359 I 0.763
LLOJ000759 Lutzomyia longipalpis LLOJ000759 I 0.710
LotgiG159505 Lottia gigantea LotgiG159505 I 0.786
MDOA002342 Musca domestica MDOA002342 I 0.763
MESCA005881 Megaselia scalaris MESCA005881 I 0.735
Myotis_brandtii_RBPJ_10027377 Myotis brandtii Myotis_brandtii_RBPJ_10027377 I 0.847
NV17858 Nasonia vitripennis NV17858 I 0.779
NV17967 Nasonia vitripennis NV17967 I 0.725
Ocbimv22031643m.g Octopus bimaculoides Ocbimv22031643m.g I 0.832
Ogr02745 Ophisaurus gracilis Ogr02745 I 0.839
PHUM462870 Pediculus humanus PHUM462870 I 0.748
Pvit_10584 Pogona vitticeps Pvit_10584 I 0.847
RBPJ Anolis carolinensis ENSACAG00000014578 I 0.847
RBPJ Bos taurus ENSBTAG00000003602 I 0.847
RBPJ Canis familiaris ENSCAFG00000016387 I 0.847
RBPJ Choloepus hoffmanni ENSCHOG00000001582 I 0.847
RBPJ Callithrix jacchus ENSCJAG00000021033 I 0.847
RBPJ Cavia porcellus ENSCPOG00000007041 I 0.786
RBPJ Dasypus novemcinctus ENSDNOG00000035383 I 0.847
Rbpj Dipodomys ordii ENSDORG00000006352 I 0.847
RBPJ Equus caballus ENSECAG00000019257 I 0.847
RBPJ Erinaceus europaeus ENSEEUG00000009686 I 0.847
RBPJ Felis catus ENSFCAG00000030363 I 0.808
RBPJ Homo sapiens ENSG00000168214 D 0.847
RBPJ Gallus gallus ENSGALG00000014365 I 0.855
RBPJ Gorilla gorilla ENSGGOG00000004582 I 0.847
RBPJ Loxodonta africana ENSLAFG00000000410 I 0.847
RBPJ Meleagris gallopavo ENSMGAG00000012418 I 0.840
RBPJ Myotis lucifugus ENSMLUG00000017187 I 0.847
RBPJ Macaca mulatta ENSMMUG00000015828 I 0.847
RBPJ Monodelphis domestica ENSMODG00000000129 I 0.847
Rbpj Mus musculus ENSMUSG00000039191 D 0.847
RBPJ Ornithorhynchus anatinus ENSOANG00000006699 I 0.847
RBPJ Oryctolagus cuniculus ENSOCUG00000013449 I 0.847
RBPJ Otolemur garnettii ENSOGAG00000007913 I 0.847
RBPJ Pan troglodytes ENSPTRG00000015968 I 0.847
RBPJ Pteropus vampyrus ENSPVAG00000014199 I 0.847
Rbpj Rattus norvegicus ENSRNOG00000007797 I 0.779
Rbpj Rattus norvegicus ENSRNOG00000046327 I 0.847
RBPJ Sorex araneus ENSSARG00000001169 I 0.847
RBPJ Sus scrofa ENSSSCG00000022155 I 0.847
RBPJ Tupaia belangeri ENSTBEG00000002676 I 0.847
RBPJ Taeniopygia guttata ENSTGUG00000009245 I 0.855
RBPJ Tetraodon nigroviridis ENSTNIG00000012994 I 0.832
RBPJ Takifugu rubripes ENSTRUG00000014798 I 0.840
RBPJ Tursiops truncatus ENSTTRG00000009022 I 0.847
rbpj Xenopus tropicalis XB-GENE-490756 I 0.847
rbpj.S Xenopus laevis XB-GENE-865998 I 0.840
rbpja Danio rerio ENSDARG00000003398 I 0.786
rbpja Gasterosteus aculeatus ENSGACG00000015888 I 0.779
rbpja Oryzias latipes ENSORLG00000004882 I 0.752
rbpjb Danio rerio ENSDARG00000052091 I 0.824
Sakowv30027441m.g Saccoglossus kowalevskii Sakowv30027441m.g I 0.832
SINV15808 Solenopsis invicta SINV15808 I 0.763
SMAR001432 Strigamia maritima SMAR001432 I 0.802
Su(H) Drosophila melanogaster FBgn0004837 D 0.771
Su(H) Drosophila simulans FBgn0027417 I 0.771
Tal_R001466 Tyto alba Tal_R001466 I 0.855
TC014468 Tribolium castaneum TC014468 I 0.763
tetur04g02700 Tetranychus urticae tetur04g02700 I 0.767
tetur04g02730 Tetranychus urticae tetur04g02730 I 0.767
tetur11g00180 Tetranychus urticae tetur11g00180 I 0.748
YQE_03219 Dendroctonus ponderosae YQE_03219 I 0.756