Bra007099 (Brassica rapa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bra007099 T191941_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.867 1.000
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.848 0.917
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.843 0.833
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.843 0.833
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.843 0.833
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.843 0.833
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.837 0.806
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.837 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.832 0.806
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.806
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.832 0.806
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.832 0.806
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.806
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.823 0.806
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.823 0.806
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.823 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.778
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra007099.1-P GATA 233 268

Links

Other GATA family TFs
Other Brassica rapa TFs

611 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29269.m000250 Ricinus communis 29269.m000250 I
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I
Bo4g015800 Brassica oleracea Bo4g015800 I
Bo4g191350 Brassica oleracea Bo4g191350 I
Bo6g108620 Brassica oleracea Bo6g108620 N
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I
Bra004363 Brassica rapa Bra004363 N
Bra004674 Brassica rapa Bra004674 I
Bra016891 Brassica rapa Bra016891 I
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I
Carubv10020369m.g Capsella rubella Carubv10020369m.g I
Carubv10023478m.g Capsella rubella Carubv10023478m.g I
Ca_24655 Cicer arietinum Ca_24655 I
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I
Lus10012020.g Linum usitatissimum Lus10012020.g I
Lus10016275.g Linum usitatissimum Lus10016275.g I
Lus10021034.g Linum usitatissimum Lus10021034.g I
Lus10023818.g Linum usitatissimum Lus10023818.g I
MDP0000297978 Malus domestica MDP0000297978 I
MDP0000589558 Malus domestica MDP0000589558 I
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I
Pavir.J11258 Panicum virgatum Pavir.J11258 I
Pm002693 Prunus mume Pm002693 I
Pm030597 Prunus mume Pm030597 I
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I
Si030195m.g Setaria italica Si030195m.g I
SPL9 Arabidopsis thaliana AT2G42200 D
TCM_024873 Theobroma cacao TCM_024873 I
Thhalv10016816m.g Eutrema salsugineum Thhalv10016816m.g I
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I