CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo9g070200
(
Brassica oleracea
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bo9g070200
T199961_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo9g070200.1
GRAS
204
578
LVHALMACAEAIQNNDLSIAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYRLSPPQTQIDHSLSDTLRRSSRAADLPPLSAADSDRSLSLGHAPDALLRDVPLPQAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPVFRLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSEIEAVAVNSVFELHKLLGRTGGIEKVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGVPSSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWANRFGTSGFAPAHLGSNAFKQASMLLALFNGGEGYSVEENNGCLMLGWHTRPLITTSAWK
Links
Other
GRAS
family TFs
Other
Brassica oleracea
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29692.m000540
Ricinus communis
29692.m000540
N
0.761
Bo7g078550
Brassica oleracea
Bo7g078550
N
0.835
Bostr.7128s0107
Boechera stricta
Bostr.7128s0107
N
0.777
Bostr.7903s0021
Boechera stricta
Bostr.7903s0021
N
0.843
Bra017443
Brassica rapa
Bra017443
N
0.761
Bra024875
Brassica rapa
Bra024875
N
0.843
Cagra.2235s0013
Capsella grandiflora
Cagra.2235s0013
N
0.835
Cagra.3501s0003
Capsella grandiflora
Cagra.3501s0003
N
0.786
Carubv10008833m.g
Capsella rubella
Carubv10008833m.g
N
0.783
Carubv10018534m.g
Capsella rubella
Carubv10018534m.g
N
0.797
cassava14484.m1
Manihot esculenta
cassava14484.m1
N
0.761
cassava15077.m1
Manihot esculenta
cassava15077.m1
N
0.761
Ca_05046
Cicer arietinum
Ca_05046
N
0.712
Ciclev10017466m.g
Citrus clementina
Ciclev10017466m.g
N
0.710
Cla003996
Citrullus lanatus
Cla003996
N
0.753
Cucsa.280310
Cucumis sativus
Cucsa.280310
N
0.739
Eucgr.G02163
Eucalyptus grandis
Eucgr.G02163
N
0.755
evm.TU.supercontig_2.240
Carica papaya
evm.TU.supercontig_2.240
I
0.742
GAI
Arabidopsis thaliana
AT1G14920
N
0.786
GAI
Arabidopsis lyrata
fgenesh2_kg.1__1634__AT1G14920.1
N
0.780
GAI1
Vitis vinifera
VIT_01s0011g05260
N
0.728
GLYMA05G27190
Glycine max
GLYMA05G27190
N
0.725
GLYMA08G10140
Glycine max
GLYMA08G10140
N
0.723
Gorai.002G177000
Gossypium raimondii
Gorai.002G177000
N
0.753
MDP0000237978
Malus domestica
MDP0000237978
N
0.723
orange1.1g043131m.g
Citrus sinensis
orange1.1g043131m.g
N
0.701
PK14700.1
Cannabis sativa
PK14700.1
N
0.739
Pm006304
Prunus mume
Pm006304
N
0.751
POPTR_0008s13090
Populus trichocarpa
POPTR_0008s13090
N
0.761
POPTR_0010s12080
Populus trichocarpa
POPTR_0010s12080
N
0.747
PRUPE_ppa005944mg
Prunus persica
PRUPE_ppa005944mg
N
0.734
RGA
Arabidopsis thaliana
AT2G01570
N
0.835
RGA1
Arabidopsis lyrata
fgenesh2_kg.5__65__AT2G01570.1
N
0.830
SapurV1A.0015s0210
Salix purpurea
SapurV1A.0015s0210
N
0.734
SapurV1A.0405s0090
Salix purpurea
SapurV1A.0405s0090
N
0.747
TCM_010965
Theobroma cacao
TCM_010965
N
0.764
Thhalv10005482m.g
Eutrema salsugineum
Thhalv10005482m.g
N
0.869
Thhalv10007323m.g
Eutrema salsugineum
Thhalv10007323m.g
N
0.788