HAT4 (Arabidopsis thaliana)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AT4G16780 T204504_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.844 0.877
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.844 0.877
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.814 0.895
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.814 0.895
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.814 0.860
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.814 0.860
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.814 0.860
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.808 0.825
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.793 0.860
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.773 0.667
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.773 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G16780.1 Homeodomain 127 183

Links

Other Homeodomain family TFs
Other Arabidopsis thaliana TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB010774 Anopheles albimanus AALB010774 N 0.000
AATE010517 Anopheles atroparvus AATE010517 N 0.000
ACHR009406 Anopheles christyi ACHR009406 N 0.000
ACOM023178 Anopheles coluzzii ACOM023178 N 0.000
ACOM031313 Anopheles coluzzii ACOM031313 N 0.000
ACUA017712 Anopheles culicifacies ACUA017712 N 0.000
ACUA018515 Anopheles culicifacies ACUA018515 N 0.000
ADAC000821 Anopheles darlingi ADAC000821 N 0.000
AEPI000126 Anopheles epiroticus AEPI000126 N 0.000
AEPI002968 Anopheles epiroticus AEPI002968 N 0.000
AFAF008679 Anopheles farauti AFAF008679 N 0.000
Afo_R012244 Aptenodytes forsteri Afo_R012244 N 0.000
AFUN007608 Anopheles funestus AFUN007608 N 0.000
Alligator_sinensis_CCG010633.1 Alligator sinensis Alligator_sinensis_CCG010633.1 N 0.000
AMAM014256 Anopheles maculatus AMAM014256 N 0.000
AMEC006413 Anopheles melas AMEC006413 N 0.000
AMEC007961 Anopheles melas AMEC007961 N 0.000
AMEM017070 Anopheles merus AMEM017070 N 0.000
AMIN011087 Anopheles minimus AMIN011087 N 0.000
ANCCAN_03409 Ancylostoma caninum ANCCAN_03409 N 0.000
AQUA001991 Anopheles quadriannulatus AQUA001991 N 0.000
AQUA007256 Anopheles quadriannulatus AQUA007256 N 0.000
ASIS020685 Anopheles sinensis ASIS020685 N 0.000
ASTEI02549 Anopheles stephensi ASTEI02549 N 0.000
A_05161 Schistosoma haematobium A_05161 N 0.000
A_05714 Schistosoma haematobium A_05714 N 0.000
BRADI1G63680 Brachypodium distachyon BRADI1G63680 N 0.000
BRADI3G23370 Brachypodium distachyon BRADI3G23370 N 0.000
BTMF_0000360801 Brugia timori BTMF_0000360801 N 0.000
Carubv10007218m.g Capsella rubella Carubv10007218m.g N 0.000
Ca_08015 Cicer arietinum Ca_08015 N 0.000
Cla017771 Citrullus lanatus Cla017771 N 0.000
CLEC001113 Cimex lectularius CLEC001113 N 0.000
CLEC003989 Cimex lectularius CLEC003989 N 0.000
CPIJ004950 Culex quinquefasciatus CPIJ004950 N 0.000
CpipJ_CPIJ004950 Culex pipiens CpipJ_CPIJ004950 N 0.000
D917_09256 Trichinella nativa D917_09256 I 0.000
DICVIV_11023 Dictyocaulus viviparus DICVIV_11023 N 0.000
DLX1 Loxodonta africana ENSLAFG00000003551 N 0.000
DLX3 Felis catus ENSFCAG00000002643 N 0.000
DLX3 Loxodonta africana ENSLAFG00000028511 N 0.000
EEL_0000211501 Elaeophora elaphi EEL_0000211501 N 0.000
EMIHUDRAFT_217694 Emiliania huxleyi EMIHUDRAFT_217694 N 0.000
ENSFALG00000010250 Ficedula albicollis ENSFALG00000010250 N 0.000
ENSMGAG00000010118 Meleagris gallopavo ENSMGAG00000010118 N 0.000
ENSMGAG00000016039 Meleagris gallopavo ENSMGAG00000016039 N 0.000
ENSOANG00000010094 Ornithorhynchus anatinus ENSOANG00000010094 N 0.000
ENSPMAG00000010155 Petromyzon marinus ENSPMAG00000010155 N 0.000
ENSSHAG00000011988 Sarcophilus harrisii ENSSHAG00000011988 I 0.000
ENSTGUG00000001643 Taeniopygia guttata ENSTGUG00000001643 N 0.000
EVEC_0000608301 Enterobius vermicularis EVEC_0000608301 N 0.000
EVEC_0001263401 Enterobius vermicularis EVEC_0001263401 N 0.000
F775_01938 Aegilops tauschii F775_01938 N 0.000
F775_10961 Aegilops tauschii F775_10961 N 0.000
fgenesh2_pg.scaffold_94000102 Branchiostoma floridae fgenesh2_pg.scaffold_94000102 N 0.000
gene23926-v1.0-hybrid Fragaria vesca gene23926-v1.0-hybrid N 0.000
GPUH_0000517501 Gongylonema pulchrum GPUH_0000517501 N 0.000
GPUH_0002121901 Gongylonema pulchrum GPUH_0002121901 N 0.000
GSMUA_Achr3G23090_001 Musa acuminata GSMUA_Achr3G23090_001 N 0.000
HHAL000970-PA Halyomorpha halys HHAL000970-PA N 0.000
HMEL008501 Heliconius melpomene HMEL008501 N 0.000
ISCW020503 Ixodes scapularis ISCW020503 N 0.000
LCUP002617 Lucilia cuprina LCUP002617 N 0.000
LjT36I04.40.nd Lotus japonicus LjT36I04.40.nd N 0.000
LLOJ002764 Lutzomyia longipalpis LLOJ002764 N 0.000
LPERR08G06500 Leersia perrieri LPERR08G06500 N 0.000
Lus10013960.g Linum usitatissimum Lus10013960.g N 0.000
MCINX006168 Melitaea cinxia MCINX006168 N 0.000
Minc14799 Meloidogyne incognita Minc14799 N 0.000
MTR_4g088065 Medicago truncatula MTR_4g088065 N 0.000
Myotis_brandtii_DLX3_10017059 Myotis brandtii Myotis_brandtii_DLX3_10017059 N 0.000
NEMVEDRAFT_v1g101680 Nematostella vectensis NEMVEDRAFT_v1g101680 N 0.000
nLs.2.1.2.g07663 Litomosoides sigmodontis nLs.2.1.2.g07663 N 0.000
nOo.2.0.1.g04758 Onchocerca ochengi nOo.2.0.1.g04758 N 0.000
nOo.2.0.1.g09965 Onchocerca ochengi nOo.2.0.1.g09965 N 0.000
nRc.2.0.1.g40851 Romanomermis culicivorax nRc.2.0.1.g40851 N 0.000
OGLUM06G16330 Oryza glumaepatula OGLUM06G16330 N 0.000
OLONG_012459 Oryza longistaminata OLONG_012459 N 0.000
OPUNC01G25730 Oryza punctata OPUNC01G25730 N 0.000
Pavir.Fa02028 Panicum virgatum Pavir.Fa02028 N 0.000
Pavir.J05483 Panicum virgatum Pavir.J05483 N 0.000
PDK_20s1347391g002 Phoenix dactylifera PDK_20s1347391g002 N 0.000
PDK_20s1410161g001 Phoenix dactylifera PDK_20s1410161g001 N 0.000
PPA25533 Pristionchus pacificus PPA25533 N 0.000
RPRC002292 Rhodnius prolixus RPRC002292 N 0.000
SBAD_0000398601 Soboliphyme baturini SBAD_0000398601 N 0.000
scaffold54-EXSNAP2012.71 Pristionchus exspectatus scaffold54-EXSNAP2012.71 N 0.000
SCUD_0001639501 Schistosoma curassoni SCUD_0001639501 N 0.000
Smp_136900 Schistosoma mansoni Smp_136900 N 0.000
SMRZ_0001858401 Schistosoma margrebowiei SMRZ_0001858401 N 0.000
SPER_0000821201 Spirometra erinaceieuropaei SPER_0000821201 N 0.000
SPER_0001680701 Spirometra erinaceieuropaei SPER_0001680701 N 0.000
SROB_0001224301 Schistosoma rodhaini SROB_0001224301 N 0.000
SVUK_0001919201 Strongylus vulgaris SVUK_0001919201 N 0.000
TELCIR_17471 Teladorsagia circumcincta TELCIR_17471 N 0.000
TRAES3BF096700010CFD_g Triticum aestivum TRAES3BF096700010CFD_g N 0.000
TRAES3BF096700040CFD_g Triticum aestivum TRAES3BF096700040CFD_g N 0.000
Traes_4BL_085791CB2 Triticum aestivum Traes_4BL_085791CB2 N 0.000
Traes_6DL_D722B6E13 Triticum aestivum Traes_6DL_D722B6E13 N 0.000
TRE_0000521801 Trichobilharzia regenti TRE_0000521801 N 0.000
TRE_0000614101 Trichobilharzia regenti TRE_0000614101 N 0.000
TRIUR3_29318 Triticum urartu TRIUR3_29318 N 0.000
TRIUR3_32002 Triticum urartu TRIUR3_32002 N 0.000
TRIUR3_33331 Triticum urartu TRIUR3_33331 N 0.000
WUBG_02918 Wuchereria bancrofti WUBG_02918 N 0.000