CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjT36I04.40.nd
(
Lotus japonicus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
LjT36I04.40.nd
T230916_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjT36I04.40.nd
Homeodomain
90
131
KRCFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT
Links
Other
Homeodomain
family TFs
Other
Lotus japonicus
TFs
249 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_6DL_D722B6E13
Triticum aestivum
Traes_6DL_D722B6E13
N
0.844
PDK_20s1410161g001
Phoenix dactylifera
PDK_20s1410161g001
N
0.844
OLONG_012459
Oryza longistaminata
OLONG_012459
N
0.822
BRADI3G23370
Brachypodium distachyon
BRADI3G23370
N
0.821
gene23926-v1.0-hybrid
Fragaria vesca
gene23926-v1.0-hybrid
N
0.812
PDK_20s1347391g002
Phoenix dactylifera
PDK_20s1347391g002
N
0.812
GRMZM2G004334
Zea mays
GRMZM2G004334
N
0.810
OLONG_008306
Oryza longistaminata
OLONG_008306
N
0.810
POPTR_0012s03550
Populus trichocarpa
POPTR_0012s03550
N
0.810
cassava13400.valid.m1
Manihot esculenta
cassava13400.valid.m1
N
0.810
mgf006959m
Mimulus guttatus
mgf006959m
N
0.810
F775_10961
Aegilops tauschii
F775_10961
N
0.802
GRMZM2G123140
Zea mays
GRMZM2G123140
I
0.800
Traes_1DL_9FB53E48A
Triticum aestivum
Traes_1DL_9FB53E48A
N
0.800
MDP0000690933
Malus domestica
MDP0000690933
N
0.800
PGSC0003DMG400013263
Solanum tuberosum
PGSC0003DMG400013263
N
0.798
GSMUA_Achr3G23090_001
Musa acuminata
GSMUA_Achr3G23090_001
N
0.790
Pavir.Fa02028
Panicum virgatum
Pavir.Fa02028
N
0.790
Carubv10007218m.g
Capsella rubella
Carubv10007218m.g
N
0.783
Traes_6BL_4301B7F15
Triticum aestivum
Traes_6BL_4301B7F15
N
0.776
OLONG_017944
Oryza longistaminata
OLONG_017944
N
0.772
OS01G0788800
Oryza sativa
OS01G0788800
N
0.772
TCM_016582
Theobroma cacao
TCM_016582
I
0.768
Gorai.003G184900
Gossypium raimondii
Gorai.003G184900
I
0.768
Ca_08015
Cicer arietinum
Ca_08015
N
0.763
PGSC0003DMG400019030
Solanum tuberosum
PGSC0003DMG400019030
N
0.752
OMERI08G08060
Oryza meridionalis
OMERI08G08060
N
0.742
BRADI2G50510
Brachypodium distachyon
BRADI2G50510
N
0.732
gene25833-v1.0-hybrid
Fragaria vesca
gene25833-v1.0-hybrid
N
0.732
GLYMA08G09430
Glycine max
GLYMA08G09430
N
0.726
Traes_3AL_F42853DA5
Triticum aestivum
Traes_3AL_F42853DA5
N
0.719
TRIUR3_32002
Triticum urartu
TRIUR3_32002
N
0.707
Bo1g131210
Brassica oleracea
Bo1g131210
N
0.703
TRAES3BF096700010CFD_g
Triticum aestivum
TRAES3BF096700010CFD_g
N
0.694
Ocbimv22024994m.g
Octopus bimaculoides
Ocbimv22024994m.g
N
0.693
csin109617
Clonorchis sinensis
csin109617
N
0.689
augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0
N
0.688
TRIUR3_29318
Triticum urartu
TRIUR3_29318
N
0.686
ENSOCUG00000013528
Oryctolagus cuniculus
ENSOCUG00000013528
I
0.684
PGSC0003DMG400007775
Solanum tuberosum
PGSC0003DMG400007775
N
0.684
nRc.2.0.1.g21365
Romanomermis culicivorax
nRc.2.0.1.g21365
N
0.681
GI23625
Drosophila mojavensis
FBgn0146351
N
0.678
TRAES3BF096700040CFD_g
Triticum aestivum
TRAES3BF096700040CFD_g
N
0.678
scaffold61-EXSNAP2012.75
Pristionchus exspectatus
scaffold61-EXSNAP2012.75
N
0.675
Ca_19697
Cicer arietinum
Ca_19697
N
0.673
ENSPTRG00000017522
Pan troglodytes
ENSPTRG00000017522
N
0.672
TLX3
Taeniopygia guttata
ENSTGUG00000014966
N
0.672
Minc02159
Meloidogyne incognita
Minc02159
N
0.672
ACAC_0000093601
Angiostrongylus cantonensis
ACAC_0000093601
N
0.672
ACOC_0000334101
Angiostrongylus costaricensis
ACOC_0000334101
N
0.672
ANCCAN_27026
Ancylostoma caninum
ANCCAN_27026
N
0.672
ANCCEY_10891
Ancylostoma ceylanicum
ANCCEY_10891
N
0.672
SMTD_0001030501
Schistosoma mattheei
SMTD_0001030501
N
0.672
PPA28666
Pristionchus pacificus
PPA28666
N
0.667
SINV22981
Solenopsis invicta
SINV22981
N
0.665
YQE_10731
Dendroctonus ponderosae
YQE_10731
N
0.665
AEPI010666
Anopheles epiroticus
AEPI010666
N
0.665
AQUA015309
Anopheles quadriannulatus
AQUA015309
N
0.665
VAX1
Loxodonta africana
ENSLAFG00000018107
N
0.660
ENSSHAG00000009294
Sarcophilus harrisii
ENSSHAG00000009294
I
0.657
ENSTRUG00000017602
Takifugu rubripes
ENSTRUG00000017602
N
0.656
EMX1
Oryctolagus cuniculus
ENSOCUG00000008208
N
0.651
HelroG192586
Helobdella robusta
HelroG192586
N
0.651
PHUM118950
Pediculus humanus
PHUM118950
N
0.651
LDEC017208
Leptinotarsa decemlineata
LDEC017208
N
0.651
AFAF006159
Anopheles farauti
AFAF006159
I
0.651
nRc.2.0.1.g08298
Romanomermis culicivorax
nRc.2.0.1.g08298
N
0.651
SNAPOd2T00015975001
Oikopleura dioica
SNAPOd2T00015975001
N
0.646
ACEP22770
Atta cephalotes
ACEP22770
N
0.645
ACYPI086517
Acyrthosiphon pisum
ACYPI086517
N
0.645
tlx2
Danio rerio
ENSDARG00000011273
I
0.645
NKX6-1
Homo sapiens
ENSG00000163623
D
0.645
Tlx1
Mus musculus
ENSMUSG00000025215
I
0.645
ENSOARG00000003161
Ovis aries
ENSOARG00000003161
I
0.645
VAX2
Sus scrofa
ENSSSCG00000008318
N
0.645
ENSTNIG00000016273
Tetraodon nigroviridis
ENSTNIG00000016273
I
0.645
ENSXMAG00000003902
Xiphophorus maculatus
ENSXMAG00000003902
I
0.645
ISCW010454
Ixodes scapularis
ISCW010454
N
0.645
ISCW012145
Ixodes scapularis
ISCW012145
N
0.645
KGM_17085
Danaus plexippus
KGM_17085
N
0.645
MCINX004708
Melitaea cinxia
MCINX004708
N
0.645
MESCA006388
Megaselia scalaris
MESCA006388
N
0.645
PHUM359880
Pediculus humanus
PHUM359880
N
0.645
PHUM359910
Pediculus humanus
PHUM359910
N
0.645
RPRC003713
Rhodnius prolixus
RPRC003713
N
0.645
YQE_12889
Dendroctonus ponderosae
YQE_12889
N
0.645
Cmyd_10007464
Chelonia mydas
Cmyd_10007464
I
0.645
LDEC009173
Leptinotarsa decemlineata
LDEC009173
N
0.645
Sjc_0085440
Schistosoma japonicum
Sjc_0085440
N
0.645
SMU15011671
Schmidtea mediterranea
SMU15011671
I
0.645
nkx6-1
Xenopus tropicalis
XB-GENE-483574
I
0.645
ACUA011088
Anopheles culicifacies
ACUA011088
N
0.645
AEPI002733
Anopheles epiroticus
AEPI002733
N
0.645
AMAM008009
Anopheles maculatus
AMAM008009
N
0.645
PPAI004705
Phlebotomus papatasi
PPAI004705
N
0.645
PPAI006607
Phlebotomus papatasi
PPAI006607
I
0.645
BTMF_0001416601
Brugia timori
BTMF_0001416601
N
0.645
nDi.2.2.2.g10664
Dirofilaria immitis
nDi.2.2.2.g10664
I
0.645
PXEA_0003635301
Protopolystoma xenopodis
PXEA_0003635301
N
0.645
SPER_0001142801
Spirometra erinaceieuropaei
SPER_0001142801
I
0.645
TCLT_0000655201
Thelazia callipaeda
TCLT_0000655201
I
0.645
TRE_0000385401
Trichobilharzia regenti
TRE_0000385401
N
0.645
BGIBMGA010052
Bombyx mori
BGIBMGA010052
N
0.643
ENSOARG00000010209
Ovis aries
ENSOARG00000010209
N
0.640
ENSPVAG00000007998
Pteropus vampyrus
ENSPVAG00000007998
N
0.640
SPU_022574
Strongylocentrotus purpuratus
SPU_022574
N
0.637
Tal_R011355
Tyto alba
Tal_R011355
N
0.637
TRIUR3_33331
Triticum urartu
TRIUR3_33331
N
0.636
ACHR008505
Anopheles christyi
ACHR008505
N
0.634
ACUA020431
Anopheles culicifacies
ACUA020431
N
0.634
AEPI010384
Anopheles epiroticus
AEPI010384
N
0.634
AFUN002980
Anopheles funestus
AFUN002980
N
0.632
ASTEI00742
Anopheles stephensi
ASTEI00742
N
0.632
ASIM_0000060401
Anisakis simplex
ASIM_0000060401
N
0.631
ASIM_0001450801
Anisakis simplex
ASIM_0001450801
N
0.631
maker-nMf.1.1.scaf28435-augustus-gene-0.3
Meloidogyne floridensis
maker-nMf.1.1.scaf28435-augustus-gene-0.3
N
0.630
hoxc12a
Gasterosteus aculeatus
ENSGACG00000009391
N
0.629
HMEL006102
Heliconius melpomene
HMEL006102
N
0.626
M378DRAFT_56764
Amanita muscaria
M378DRAFT_56764
N
0.626
DICVIV_02944
Dictyocaulus viviparus
DICVIV_02944
N
0.623
K443DRAFT_111002
Laccaria amethystina
K443DRAFT_111002
N
0.622
LACBIDRAFT_243459
Laccaria bicolor
LACBIDRAFT_243459
N
0.622
AMAM021430
Anopheles maculatus
AMAM021430
N
0.622
LOAG_18696
Loa loa
LOAG_18696
N
0.621
AMIN006246
Anopheles minimus
AMIN006246
N
0.621
PPAI007203
Phlebotomus papatasi
PPAI007203
N
0.621
nOo.2.0.1.g12002
Onchocerca ochengi
nOo.2.0.1.g12002
N
0.621
ECPE_0000357901
Echinostoma caproni
ECPE_0000357901
N
0.619
maker-nMf.1.1.scaf05303-snap-gene-0.8
Meloidogyne floridensis
maker-nMf.1.1.scaf05303-snap-gene-0.8
N
0.619
EEL_0000533501
Elaeophora elaphi
EEL_0000533501
N
0.618
GPUH_0000797801
Gongylonema pulchrum
GPUH_0000797801
N
0.618
TCNE_0000505101
Toxocara canis
TCNE_0000505101
N
0.618
BGLB006778
Biomphalaria glabrata
BGLB006778
N
0.617
ENSCSAG00000006765
Chlorocebus sabaeus
ENSCSAG00000006765
N
0.616
ENSECAG00000002506
Equus caballus
ENSECAG00000002506
I
0.616
HMX2
Felis catus
ENSFCAG00000023440
N
0.616
ENSFCAG00000025984
Felis catus
ENSFCAG00000025984
N
0.616
Alligator_sinensis_CCG004967.1
Alligator sinensis
Alligator_sinensis_CCG004967.1
N
0.616
ANCCAN_11756
Ancylostoma caninum
ANCCAN_11756
N
0.616
CLEC004114
Cimex lectularius
CLEC004114
N
0.615
Minc14799
Meloidogyne incognita
Minc14799
N
0.614
BTMF_0000546301
Brugia timori
BTMF_0000546301
N
0.614
SPER_0001728701
Spirometra erinaceieuropaei
SPER_0001728701
N
0.614
Tal_R008067
Tyto alba
Tal_R008067
I
0.613
AATE009299
Anopheles atroparvus
AATE009299
I
0.613
DME_0000044501
Dracunculus medinensis
DME_0000044501
N
0.613
NECAME_08983
Necator americanus
NECAME_08983
N
0.613
CpipJ_CPIJ001378
Culex pipiens
CpipJ_CPIJ001378
N
0.612
Bm8478
Brugia malayi
Bm8478
N
0.612
CJA40511
Caenorhabditis japonica
CJA40511
I
0.612
CPIJ001378
Culex quinquefasciatus
CPIJ001378
N
0.612
ENSACAG00000000961
Anolis carolinensis
ENSACAG00000000961
N
0.612
ENSACAG00000005787
Anolis carolinensis
ENSACAG00000005787
N
0.612
ENSACAG00000027662
Anolis carolinensis
ENSACAG00000027662
I
0.612
NKX6-3
Canis familiaris
ENSCAFG00000005710
N
0.612
ENSCJAG00000004205
Callithrix jacchus
ENSCJAG00000004205
I
0.612
NKX6-3
Homo sapiens
ENSG00000165066
D
0.612
ENSMEUG00000015794
Macropus eugenii
ENSMEUG00000015794
I
0.612
ENSMMUG00000014725
Macaca mulatta
ENSMMUG00000014725
N
0.612
ENSOANG00000003475
Ornithorhynchus anatinus
ENSOANG00000003475
I
0.612
ENSPANG00000014739
Papio anubis
ENSPANG00000014739
N
0.612
ENSPCAG00000005898
Procavia capensis
ENSPCAG00000005898
N
0.612
ENSPPYG00000018545
Pongo abelii
ENSPPYG00000018545
N
0.612
NKX6-3
Tursiops truncatus
ENSTTRG00000003567
N
0.612
GRMZM2G381748
Zea mays
GRMZM2G381748
N
0.612
LOAG_07462
Loa loa
LOAG_07462
N
0.612
PPA04715
Pristionchus pacificus
PPA04715
N
0.612
Cmyd_10012338
Chelonia mydas
Cmyd_10012338
N
0.612
CLEC002615
Cimex lectularius
CLEC002615
N
0.612
LCUP008695
Lucilia cuprina
LCUP008695
N
0.612
AALB008451
Anopheles albimanus
AALB008451
N
0.612
AARA004444
Anopheles arabiensis
AARA004444
N
0.612
ADIR006385
Anopheles dirus
ADIR006385
N
0.612
AMEM011598
Anopheles merus
AMEM011598
N
0.612
AMIN002696
Anopheles minimus
AMIN002696
N
0.612
AQUA009533
Anopheles quadriannulatus
AQUA009533
N
0.612
SMRZ_0000903001
Schistosoma margrebowiei
SMRZ_0000903001
N
0.612
SROB_0001009601
Schistosoma rodhaini
SROB_0001009601
N
0.612
HOXB2
Pan troglodytes
ENSPTRG00000009352
I
0.611
hoxb2.S
Xenopus laevis
XB-GENE-478530
I
0.611
AMEM007254
Anopheles merus
AMEM007254
N
0.611
HNAJ_0000607701
Hymenolepis nana
HNAJ_0000607701
N
0.611
SBAD_0000495201
Soboliphyme baturini
SBAD_0000495201
N
0.611
T265_14387
Opisthorchis viverrini
T265_14387
N
0.611
LCUP011770
Lucilia cuprina
LCUP011770
N
0.610
SVUK_0001081801
Strongylus vulgaris
SVUK_0001081801
N
0.610
TLX2
Ochotona princeps
ENSOPRG00000014031
N
0.609
ISCW012461
Ixodes scapularis
ISCW012461
N
0.609
LDEC016573
Leptinotarsa decemlineata
LDEC016573
N
0.609
ANCCAN_23849
Ancylostoma caninum
ANCCAN_23849
N
0.609
WUBG_03180
Wuchereria bancrofti
WUBG_03180
N
0.608
GH13586
Drosophila grimshawi
FBgn0121062
N
0.608
KGM_15359
Danaus plexippus
KGM_15359
N
0.608
NEMVEDRAFT_v1g101680
Nematostella vectensis
NEMVEDRAFT_v1g101680
N
0.608
HHAL004742-PA
Halyomorpha halys
HHAL004742-PA
N
0.608
ANCCAN_18983
Ancylostoma caninum
ANCCAN_18983
N
0.608
ANCCEY_10591
Ancylostoma ceylanicum
ANCCEY_10591
N
0.608
ANCDUO_04800
Ancylostoma duodenale
ANCDUO_04800
N
0.608
ASIM_0000175201
Anisakis simplex
ASIM_0000175201
N
0.608
ASIM_0000357501
Anisakis simplex
ASIM_0000357501
N
0.608
HPBE_0002651601
Heligmosomoides bakeri
HPBE_0002651601
N
0.608
NECAME_11765
Necator americanus
NECAME_11765
N
0.608
SMTD_0001153001
Schistosoma mattheei
SMTD_0001153001
N
0.608
ENSGALG00000020423
Gallus gallus
ENSGALG00000020423
N
0.607
DICVIV_09128
Dictyocaulus viviparus
DICVIV_09128
N
0.607
LDEC004784
Leptinotarsa decemlineata
LDEC004784
N
0.606
A_05714
Schistosoma haematobium
A_05714
N
0.606
NBR_0000086301
Nippostrongylus brasiliensis
NBR_0000086301
N
0.606
ENSMLUG00000022220
Myotis lucifugus
ENSMLUG00000022220
N
0.605
ENSTGUG00000000339
Taeniopygia guttata
ENSTGUG00000000339
N
0.605
Alligator_sinensis_CCG010660.1
Alligator sinensis
Alligator_sinensis_CCG010660.1
N
0.605
SNAPOd2T00002147001
Oikopleura dioica
SNAPOd2T00002147001
N
0.605
BGLB011885
Biomphalaria glabrata
BGLB011885
N
0.605
ANCCAN_14745
Ancylostoma caninum
ANCCAN_14745
N
0.605
DICVIV_01479
Dictyocaulus viviparus
DICVIV_01479
N
0.605
SPAL_0000530600
Strongyloides papillosus
SPAL_0000530600
N
0.605
TRE_0000162501
Trichobilharzia regenti
TRE_0000162501
N
0.605
ENSSHAG00000011988
Sarcophilus harrisii
ENSSHAG00000011988
I
0.604
Tal_R004953
Tyto alba
Tal_R004953
N
0.604
WUBG_09511
Wuchereria bancrofti
WUBG_09511
N
0.603
BGIBMGA003265
Bombyx mori
BGIBMGA003265
N
0.603
CGI_10026625
Crassostrea gigas
CGI_10026625
N
0.603
ENSMGAG00000010685
Meleagris gallopavo
ENSMGAG00000010685
I
0.603
GBX2
Oryzias latipes
ENSORLG00000001376
I
0.603
F775_01938
Aegilops tauschii
F775_01938
N
0.603
HMEL016138
Heliconius melpomene
HMEL016138
N
0.603
Ocbimv22010205m.g
Octopus bimaculoides
Ocbimv22010205m.g
N
0.603
HHAL009617-PA
Halyomorpha halys
HHAL009617-PA
N
0.603
BGLB007768
Biomphalaria glabrata
BGLB007768
N
0.603
DILT_0000613101
Diphyllobothrium latum
DILT_0000613101
N
0.603
PEQ_0000993201
Parascaris equorum
PEQ_0000993201
N
0.603
SPER_0001567701
Spirometra erinaceieuropaei
SPER_0001567701
N
0.603
Smp_136900
Schistosoma mansoni
Smp_136900
N
0.602
BARX2
Ornithorhynchus anatinus
ENSOANG00000000573
N
0.601
TRAES3BF096700070CFD_g
Triticum aestivum
TRAES3BF096700070CFD_g
N
0.601
Cla017350
Citrullus lanatus
Cla017350
N
0.601
BGLB007714
Biomphalaria glabrata
BGLB007714
N
0.601
WUBG_18725
Wuchereria bancrofti
WUBG_18725
N
0.600
ACEP24283
Atta cephalotes
ACEP24283
N
0.600
ENSAMXG00000008007
Astyanax mexicanus
ENSAMXG00000008007
I
0.600
BARX1
Homo sapiens
ENSG00000131668
D
0.600
ENSMGAG00000009298
Meleagris gallopavo
ENSMGAG00000009298
N
0.600
ENSTSYG00000005123
Tarsius syrichta
ENSTSYG00000005123
N
0.600
ENSXMAG00000013191
Xiphophorus maculatus
ENSXMAG00000013191
N
0.600
Alligator_sinensis_CCG001661.1
Alligator sinensis
Alligator_sinensis_CCG001661.1
I
0.600
Cmyd_10005403
Chelonia mydas
Cmyd_10005403
I
0.600
BGLB012524
Biomphalaria glabrata
BGLB012524
N
0.600
LLOJ004702
Lutzomyia longipalpis
LLOJ004702
N
0.600
SCUD_0000383301
Schistosoma curassoni
SCUD_0000383301
N
0.599