hoxb10a (Danio rerio)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSDARG00000011579 T208530_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hoxd10
M00509_2.00 		Mus musculus
NNNNNNNN
NNNNNNNN		 PBM
Berger et al.(2008)
Hoxd10_2368 		0.816 0.930
HOXD10
M05112_2.00 		Homo sapiens
NKTTTATKRC
GYMATAAAMN		 SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_1 		0.816 0.930
HOXD10
M05113_2.00 		Homo sapiens
RTCGTAAAHN
NDTTTACGAY		 SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_2 		0.816 0.930
HOXD10
M05116_2.00 		Homo sapiens
RGTCGTAAAAH
DTTTTACGACY		 SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_1 		0.816 0.930
HOXD10
M05117_2.00 		Homo sapiens
RRYMATAAAAH
DTTTTATKRYY		 SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_2 		0.816 0.930
HOXD10
M10687_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD10_Q2 		0.816 0.930
HOXD10
M10688_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD10_Q6 		0.816 0.930
HOXD10
M05114_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_1 		0.816 0.930
HOXD10
M05115_2.00 		Homo sapiens
GTCGTAAAHN
NDTTTACGAC		 SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_2 		0.816 0.930
HOXD10
M05118_2.00 		Homo sapiens
VGTCGTAAAAH
DTTTTACGACB		 SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_1 		0.816 0.930
HOXD10
M05119_2.00 		Homo sapiens
DGYAATAAAAH
DTTTTATTRCH		 SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_2 		0.816 0.930
Hoxa10
M00382_2.00 		Mus musculus
NHWAYNNNN
NNNNRTWDN		 PBM
Berger et al.(2008)
Hoxa10_2318 		0.814 0.930
HOXA10
M05394_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_1 		0.814 0.930
HOXA10
M05395_2.00 		Homo sapiens
NTTTTATKRCY
RGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_2 		0.814 0.930
HOXA10
M05398_2.00 		Homo sapiens
NRTCRTWAANN
NNTTWAYGAYN		 SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_1 		0.814 0.930
HOXA10
M05399_2.00 		Homo sapiens
NNTTWATKRCN
NGYMATWAANN		 SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_2 		0.814 0.930
Hoxa10
M09170_2.00 		Mus musculus
DCATAAAYYRBH
DVYRRTTTATGH		 Misc
Kulakovskiy et al.(2013)
HXA10_MOUSE.H11MO.0.C 		0.814 0.930
Hoxa10
M10763_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA10_Q5 		0.814 0.930
HOXA10
M05396_2.00 		Homo sapiens
NGTCGTAAAWN
NWTTTACGACN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_1 		0.814 0.930
HOXA10
M05397_2.00 		Homo sapiens
NTTTTATKRCB
VGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_2 		0.814 0.930
HOXA10
M05400_2.00 		Homo sapiens
NRTCGTWAANN
NNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_1 		0.814 0.930
HOXA10
M05401_2.00 		Homo sapiens
NNTTWATKRYN
NRYMATWAANN		 SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_2 		0.814 0.930
Hoxc11
M00390_2.00 		Mus musculus
NTTWAYDDBN
NVHHRTWAAN		 PBM
Berger et al.(2008)
Hoxc11_3718 		0.811 0.754
HOXC11
M03131_2.00 		Homo sapiens
NWTTWAYGAYH
DRTCRTWAAWN		 SELEX
Jolma et al.(2013)
HOXC11_1 		0.811 0.754
HOXC11
M03132_2.00 		Homo sapiens
NWTTWATKRBH
DVYMATWAAWN		 SELEX
Jolma et al.(2013)
HOXC11_2 		0.811 0.754
HOXC11
M03133_2.00 		Homo sapiens
DRTCGTWAAWN
NWTTWACGAYH		 SELEX
Jolma et al.(2013)
HOXC11_3 		0.811 0.754
HOXC11
M03134_2.00 		Homo sapiens
NTTTTATKRBN
NVYMATAAAAN		 SELEX
Jolma et al.(2013)
HOXC11_4 		0.811 0.754
HOXC11
M05075_2.00 		Homo sapiens
NDTTWACGAYN
NRTCGTWAAHN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_1 		0.811 0.754
HOXC11
M05076_2.00 		Homo sapiens
NWTTWATKRCH
DGYMATWAAWN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_2 		0.811 0.754
HOXC11
M05079_2.00 		Homo sapiens
NRTCGTWAAHN
NDTTWACGAYN		 SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_1 		0.811 0.754
HOXC11
M05080_2.00 		Homo sapiens
NDTTWATKRSN
NSYMATWAAHN		 SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_2 		0.811 0.754
HOXC11
M05077_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_1 		0.811 0.754
HOXC11
M05078_2.00 		Homo sapiens
NDTTTATKRSN
NSYMATAAAHN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_2 		0.811 0.754
HOXC11
M05081_2.00 		Homo sapiens
NRTCGTWAANN
NNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_1 		0.811 0.754
HOXC11
M05082_2.00 		Homo sapiens
NNTTWAYKRSN
NSYMRTWAANN		 SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_2 		0.811 0.754
Hoxd11
M00493_2.00 		Mus musculus
DDDNNNNN
NNNNNHHH		 PBM
Berger et al.(2008)
Hoxd11_3873 		0.811 0.737
HOXD11
M03139_2.00 		Homo sapiens
RTCGTAAAWH
DWTTTACGAY		 SELEX
Jolma et al.(2013)
HOXD11_1 		0.811 0.737
HOXD11
M03140_2.00 		Homo sapiens
TTTWATKRBH
DVYMATWAAA		 SELEX
Jolma et al.(2013)
HOXD11_2 		0.811 0.737
HOXD11
M05120_2.00 		Homo sapiens
NRTCGTWAANNDTWAH
DTWAHNNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXD11_eDBD_HT-SELEX 		0.811 0.737
HOXD11
M05121_2.00 		Homo sapiens
NRTCGTWAAHNDTWAH
DTWAHNDTTWACGAYN		 SELEX
Yin et al.(2017)
HOXD11_eDBD_Methyl-HT-SELEX 		0.811 0.737
Hoxa11
M00474_2.00 		Mus musculus
NNHNHNNNN
NNNNDNDNN		 PBM
Berger et al.(2008)
Hoxa11_2218 		0.811 0.719
Hoxa11
M03274_2.00 		Mus musculus
NNDTTWAYGABN
NVTCRTWAAHNN		 SELEX
Jolma et al.(2013)
Hoxa11_1 		0.811 0.719
Hoxa11
M03275_2.00 		Mus musculus
NDTTWATKRNN
NNYMATWAAHN		 SELEX
Jolma et al.(2013)
Hoxa11_2 		0.811 0.719
HOXA11
M04897_2.00 		Homo sapiens
VGTCGTAAAWH
DWTTTACGACB		 SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_1 		0.811 0.719
HOXA11
M04898_2.00 		Homo sapiens
DDTTWATKRSN
NSYMATWAAHH		 SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_2 		0.811 0.719
HOXA11
M04899_2.00 		Homo sapiens
NRTCGTAAAWH
DWTTTACGAYN		 SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_1 		0.811 0.719
HOXA11
M04900_2.00 		Homo sapiens
DYTTTATKRCH
DGYMATAAARH		 SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_2 		0.811 0.719
Hoxc10
M00421_2.00 		Mus musculus
TTWATKAB
VTMATWAA		 PBM
Berger et al.(2008)
Hoxc10_2779 		0.810 0.930
HOXC10
M03228_2.00 		Homo sapiens
DTTTWATKDB
VHMATWAAAH		 SELEX
Jolma et al.(2013)
HOXC10_1 		0.810 0.930
HOXC10
M03229_2.00 		Homo sapiens
NNTTWATKRB
VYMATWAANN		 SELEX
Jolma et al.(2013)
HOXC10_2 		0.810 0.930
HOXC10
M03230_2.00 		Homo sapiens
NWTTWAYGAB
VTCRTWAAWN		 SELEX
Jolma et al.(2013)
HOXC10_3 		0.810 0.930
Hoxc10
M03252_2.00 		Mus musculus
DTTTWAYGAY
RTCRTWAAAH		 SELEX
Jolma et al.(2013)
Hoxc10_1 		0.810 0.930
Hoxc10
M03253_2.00 		Mus musculus
DTTTWATKRY
RYMATWAAAH		 SELEX
Jolma et al.(2013)
Hoxc10_2 		0.810 0.930
HOXC10
M05335_2.00 		Homo sapiens
NDTTTATKRCN
NGYMATAAAHN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_1 		0.810 0.930
HOXC10
M05336_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_2 		0.810 0.930
HOXC10
M05339_2.00 		Homo sapiens
NTTTTATKRCN
NGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_1 		0.810 0.930
HOXC10
M05340_2.00 		Homo sapiens
NRTCGTAAAWN
NWTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_2 		0.810 0.930
HOXC10
M05337_2.00 		Homo sapiens
NTTTTATKRCN
NGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_1 		0.810 0.930
HOXC10
M05338_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_2 		0.810 0.930
HOXC10
M05341_2.00 		Homo sapiens
DTTTTATKRCH
DGYMATAAAAH		 SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_1 		0.810 0.930
HOXC10
M05342_2.00 		Homo sapiens
VGTCGTAAAHN
NDTTTACGACB		 SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_2 		0.810 0.930
Hoxa9
M00475_2.00 		Mus musculus
NNDDBNNN
NNNVHHNN		 PBM
Berger et al.(2008)
Hoxa9_2622 		0.761 0.825
HOXA9
M03085_2.00 		Homo sapiens
NNDTTWAYGAYN
NRTCRTWAAHNN		 SELEX
Jolma et al.(2013)
HOXA10_1 		0.761 0.825
HOXA9
M03086_2.00 		Homo sapiens
NDTTWATKRYN
NRYMATWAAHN		 SELEX
Jolma et al.(2013)
HOXA10_2 		0.761 0.825
HOXA9
M04932_2.00 		Homo sapiens
NNDWWABKRC
GYMVTWWHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_1 		0.761 0.825
HOXA9
M04933_2.00 		Homo sapiens
NNDTWAYGRB
VYCRTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_2 		0.761 0.825
Hoxa9
M08138_2.00 		Mus musculus
TGATTKATKRB
VYMATMAATCA		 ChIP-seq
Mathelier et al.(2014)
MA0594.1 		0.761 0.825
HOXA9
M09130_2.00 		Homo sapiens
DCATAAAYYRBH
DVYRRTTTATGH		 Misc
Kulakovskiy et al.(2013)
HXA10_HUMAN.H11MO.0.C 		0.761 0.825
HOXA9
M09131_2.00 		Homo sapiens
HHATAAATCAH
DTGATTTATDD		 Misc
Kulakovskiy et al.(2013)
HXA9_HUMAN.H11MO.0.B 		0.761 0.825
Hoxa9
M09203_2.00 		Mus musculus
HHATAAATCAH
DTGATTTATDD		 Misc
Kulakovskiy et al.(2013)
HXA9_MOUSE.H11MO.0.B 		0.761 0.825
Hoxa9
M09575_2.00 		Mus musculus
WGATTKATDRBY
RVYHATMAATCW		 Misc
Heinz et al.(2010)
HSC-Hoxa9_GSE33509 		0.761 0.825
HOXA9
M10642_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA10_Q6 		0.761 0.825
HOXA9
M10643_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_04 		0.761 0.825
HOXA9
M10644_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_Q5_01 		0.761 0.825
HOXA9
M10645_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_Q5 		0.761 0.825
HOXA9
M04934_2.00 		Homo sapiens
NNDTWAYKRC
GYMRTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_1 		0.761 0.825
HOXA9
M04935_2.00 		Homo sapiens
NNDTWACGAY
RTCGTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_2 		0.761 0.825
Hoxd9
M03282_2.00 		Mus musculus
TTTWATKKB
VMMATWAAA		 SELEX
Jolma et al.(2013)
Hoxd9_1 		0.761 0.807
Hoxd9
M03283_2.00 		Mus musculus
DWTTWATKRY
RYMATWAAWH		 SELEX
Jolma et al.(2013)
Hoxd9_2 		0.761 0.807
Hoxd9
M03284_2.00 		Mus musculus
DTTWAYGRB
VYCRTWAAH		 SELEX
Jolma et al.(2013)
Hoxd9_3 		0.761 0.807
HOXC9
M05331_2.00 		Homo sapiens
GTCGTAAAAN
NTTTTACGAC		 SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_1 		0.761 0.807
HOXC9
M05332_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_2 		0.761 0.807
HOXD9
M05104_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_1 		0.761 0.807
HOXD9
M05105_2.00 		Homo sapiens
RTCRTAAAWN
NWTTTAYGAY		 SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_2 		0.761 0.807
HOXD9
M05108_2.00 		Homo sapiens
RTCGTAAAWN
NWTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_1 		0.761 0.807
HOXD9
M05109_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_2 		0.761 0.807
HOXC9
M09161_2.00 		Homo sapiens
HTTWATKGCH
DGCMATWAAD		 Misc
Kulakovskiy et al.(2013)
HXC9_HUMAN.H11MO.0.C 		0.761 0.807
HOXD9
M10686_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD9_Q2 		0.761 0.807
HOXC9
M05333_2.00 		Homo sapiens
RTCGTAAAHN
NDTTTACGAY		 SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_1 		0.761 0.807
HOXC9
M05334_2.00 		Homo sapiens
NTTTWATKRC
GYMATWAAAN		 SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_2 		0.761 0.807
HOXD9
M05106_2.00 		Homo sapiens
NNTTWATKRC
GYMATWAANN		 SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_1 		0.761 0.807
HOXD9
M05107_2.00 		Homo sapiens
RTCGTAAANN
NNTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_2 		0.761 0.807
HOXD9
M05110_2.00 		Homo sapiens
RTCGTAAANN
NNTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_1 		0.761 0.807
HOXD9
M05111_2.00 		Homo sapiens
NDTTWATKRC
GYMATWAAHN		 SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_2 		0.761 0.807
Hoxb9
M00410_2.00 		Mus musculus
NTTWAYDDNN
NNHHRTWAAN		 PBM
Berger et al.(2008)
Hoxb9_3413 		0.761 0.789
HOXB9
M05289_2.00 		Homo sapiens
RTCRTAAAWN
NWTTTAYGAY		 SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_1 		0.761 0.789
HOXB9
M05290_2.00 		Homo sapiens
NTTTWATKRC
GYMATWAAAN		 SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_2 		0.761 0.789
HOXB9
M05291_2.00 		Homo sapiens
GTCGTAAAHB
VDTTTACGAC		 SELEX
Yin et al.(2017)
HOXB9_eDBD_Methyl-HT-SELEX 		0.761 0.789
Hoxc9
M00470_2.00 		Mus musculus
NGTAATWAAN
NTTWATTACN		 PBM
Berger et al.(2008)
Hoxc9_2367 		0.753 0.789
Hoxc9
M08137_2.00 		Mus musculus
NWGATTTATDGSH
DSCHATAAATCWN		 ChIP-seq
Mathelier et al.(2014)
MA0485.1 		0.753 0.789
Hoxc9
M09574_2.00 		Mus musculus
TGATTTATDGCH
DGCHATAAATCA		 Misc
Heinz et al.(2010)
Ainv15-Hoxc9_GSE21812 		0.753 0.789
Hoxd12_CONSTRUCT
M00538_2.00 		PBM CONSTRUCTS
NWTWAYNDBN
NVHNRTWAWN		 PBM
Berger et al.(2008)
Hoxd12_3481 		0.650 0.632
HOXD12
M03206_2.00 		Homo sapiens
SYAATAAAA
TTTTATTRS		 SELEX
Jolma et al.(2013)
HOXD12_1 		0.650 0.632
HOXD12
M03207_2.00 		Homo sapiens
RVTCGTAAAAH
DTTTTACGABY		 SELEX
Jolma et al.(2013)
HOXD12_2 		0.650 0.632
HOXD12
M03208_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Jolma et al.(2013)
HOXD12_3 		0.650 0.632
HOXD12
M03209_2.00 		Homo sapiens
DTTWATYRC
GYRATWAAH		 SELEX
Jolma et al.(2013)
HOXD12_4 		0.650 0.632
HOXD12
M05279_2.00 		Homo sapiens
NKTWACGAYN
NRTCGTWAMN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX 		0.650 0.632
HOXD12
M05280_2.00 		Homo sapiens
NRTCGTAAAH
DTTTACGAYN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX 		0.650 0.632
HXD12_HETFR
M02196_2.00 		Heterodontus francisci
TTWATKRC
GYMATWAA		 PBM
Weirauch et al.(2014)
pTH6533 		0.618 0.614
Abd-B
M00554_2.00 		Drosophila melanogaster
NWTWAYDDNN
NNHHRTWAWN		 PBM
Busser et al.(2012a)
Abd-B 		0.606 0.702
Abd-B
M03772_2.00 		Drosophila melanogaster
DRTCRTAAAWH
DWTTTAYGAYH		 SELEX
Nitta et al.(2015)
Abd-B_1 		0.606 0.702
Abd-B
M03773_2.00 		Drosophila melanogaster
DTTTTATKRCY
RGYMATAAAAH		 SELEX
Nitta et al.(2015)
Abd-B_2 		0.606 0.702
Abd-B
M03774_2.00 		Drosophila melanogaster
NKCARYAACGACYW
WRGTCGTTRYTGMN		 SELEX
Nitta et al.(2015)
Abd-B_3 		0.606 0.702
Abd-B
M03775_2.00 		Drosophila melanogaster
DTTTWATGKSTTTY
RAAASMCATWAAAH		 SELEX
Nitta et al.(2015)
Abd-B_4 		0.606 0.702
Abd-B
M06476_2.00 		Drosophila melanogaster
TTTATKR
YMATAAA		 B1H
Mathelier et al.(2014)
MA0165.1 		0.606 0.702
Abd-B
M06211_2.00 		Drosophila melanogaster
YCATAAAA
TTTTATGR		 B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015 		0.606 0.702
Abd-B
M09672_2.00 		Drosophila melanogaster
YMATAAAAHH
DDTTTTATKR		 Misc
Kulakovskiy et al.(2009)
Abd-B 		0.606 0.702
Abd-B
M10779_2.00 		Drosophila melanogaster
VSNTTDATKRCNNN
NNNGYMATHAANSB		 Transfac
Matys et al.(2006)
I$ABDB_01 		0.606 0.702
Abd-B
M10780_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$ABDB_Q6 		0.606 0.702
Hoxc12
M00508_2.00 		Mus musculus
NDTWAYNDBN
NVHNRTWAHN		 PBM
Berger et al.(2008)
Hoxc12_3480 		0.605 0.667
HOXC12
M03135_2.00 		Homo sapiens
TTTTATTRY
RYAATAAAA		 SELEX
Jolma et al.(2013)
HOXC12_1 		0.605 0.667
HOXC12
M03136_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Jolma et al.(2013)
HOXC12_2 		0.605 0.667
HOXC12
M05083_2.00 		Homo sapiens
NGYAATAAAAN
NTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1 		0.605 0.667
HOXC12
M05084_2.00 		Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2 		0.605 0.667
HOXC12
M05085_2.00 		Homo sapiens
NGYAATAAAAH
DTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1 		0.605 0.667
HOXC12
M05086_2.00 		Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2 		0.605 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000099793 Homeodomain 142 198

Links

Other Homeodomain family TFs
Other Danio rerio TFs

896 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29032.m000021 Ricinus communis 29032.m000021 I 0.000
29813.m001479 Ricinus communis 29813.m001479 I 0.000
30169.m006343 Ricinus communis 30169.m006343 I 0.000
AC198937.4_FG005 Zea mays AC198937.4_FG005 I 0.000
AMTR_s00032p00126420 Amborella trichopoda AMTR_s00032p00126420 I 0.000
anac042 Arabidopsis lyrata fgenesh2_kg.4__2460__AT2G43000.1 I 0.000
anac042 Vitis vinifera VIT_12s0028g00860 I 0.000
anac094 Arabidopsis lyrata Al_scaffold_0007_3733 I 0.000
ANAC094 Arabidopsis thaliana AT5G39820 D 0.000
anac094 Vitis vinifera VIT_14s0108g00860 I 0.000
Aquca_002_00586 Aquilegia coerulea Aquca_002_00586 I 0.000
Aquca_006_00295 Aquilegia coerulea Aquca_006_00295 I 0.000
Aquca_026_00367 Aquilegia coerulea Aquca_026_00367 I 0.000
BGIOSGA009044 Oryza indica BGIOSGA009044 I 0.000
BGIOSGA028728 Oryza indica BGIOSGA028728 I 0.000
Bo3g036290 Brassica oleracea Bo3g036290 I 0.000
Bo4g018490 Brassica oleracea Bo4g018490 I 0.000
Bo4g192870 Brassica oleracea Bo4g192870 I 0.000
Bo5g045190 Brassica oleracea Bo5g045190 I 0.000
Bo6g064260 Brassica oleracea Bo6g064260 I 0.000
Bo6g109250 Brassica oleracea Bo6g109250 I 0.000
Bo8g076410 Brassica oleracea Bo8g076410 I 0.000
Bostr.10058s0013 Boechera stricta Bostr.10058s0013 I 0.000
Bostr.12659s0312 Boechera stricta Bostr.12659s0312 I 0.000
Bostr.25993s0479 Boechera stricta Bostr.25993s0479 I 0.000
Bra000282 Brassica rapa Bra000282 I 0.000
Bra004403 Brassica rapa Bra004403 I 0.000
Bra004736 Brassica rapa Bra004736 I 0.000
Bra016294 Brassica rapa Bra016294 I 0.000
Bra024677 Brassica rapa Bra024677 I 0.000
Bra028441 Brassica rapa Bra028441 I 0.000
Bra037743 Brassica rapa Bra037743 I 0.000
BRADI3G37067 Brachypodium distachyon BRADI3G37067 I 0.000
BRADI3G59380 Brachypodium distachyon BRADI3G59380 I 0.000
BRADI4G30177 Brachypodium distachyon BRADI4G30177 I 0.000
Cagra.0202s0012 Capsella grandiflora Cagra.0202s0012 I 0.000
Cagra.1150s0013 Capsella grandiflora Cagra.1150s0013 I 0.000
Cagra.5905s0003 Capsella grandiflora Cagra.5905s0003 I 0.000
Cagra.8367s0003 Capsella grandiflora Cagra.8367s0003 I 0.000
Carubv10006906m.g Capsella rubella Carubv10006906m.g I 0.000
Carubv10011253m.g Capsella rubella Carubv10011253m.g I 0.000
Carubv10021514m.g Capsella rubella Carubv10021514m.g I 0.000
Carubv10023730m.g Capsella rubella Carubv10023730m.g I 0.000
cassava20477.m1 Manihot esculenta cassava20477.m1 I 0.000
cassava21730.m1 Manihot esculenta cassava21730.m1 I 0.000
cassava34069.m1 Manihot esculenta cassava34069.m1 I 0.000
cassava38350.m1 Manihot esculenta cassava38350.m1 I 0.000
cassava39074.m1 Manihot esculenta cassava39074.m1 I 0.000
cassava45330.m1 Manihot esculenta cassava45330.m1 I 0.000
Ca_15236 Cicer arietinum Ca_15236 I 0.000
Ca_18749 Cicer arietinum Ca_18749 I 0.000
Ca_26322 Cicer arietinum Ca_26322 I 0.000
chr2.LjT04L10.100.nc Lotus japonicus chr2.LjT04L10.100.nc I 0.000
chr3.CM0176.150.nc Lotus japonicus chr3.CM0176.150.nc I 0.000
Ciclev10005465m.g Citrus clementina Ciclev10005465m.g I 0.000
Ciclev10006695m.g Citrus clementina Ciclev10006695m.g I 0.000
Ciclev10011891m.g Citrus clementina Ciclev10011891m.g I 0.000
Ciclev10031623m.g Citrus clementina Ciclev10031623m.g I 0.000
Ciclev10032203m.g Citrus clementina Ciclev10032203m.g I 0.000
Cla003401 Citrullus lanatus Cla003401 I 0.000
Cla005599 Citrullus lanatus Cla005599 I 0.000
Cla010347 Citrullus lanatus Cla010347 I 0.000
Cla013684 Citrullus lanatus Cla013684 I 0.000
Cla023594 Citrullus lanatus Cla023594 I 0.000
CM1835.10.nc Lotus japonicus CM1835.10.nc I 0.000
Cucsa.118320 Cucumis sativus Cucsa.118320 I 0.000
Cucsa.265620 Cucumis sativus Cucsa.265620 I 0.000
Cucsa.285120 Cucumis sativus Cucsa.285120 I 0.000
Eucgr.F01463 Eucalyptus grandis Eucgr.F01463 I 0.000
Eucgr.G02506 Eucalyptus grandis Eucgr.G02506 I 0.000
Eucgr.I01940 Eucalyptus grandis Eucgr.I01940 I 0.000
Eucgr.K01228 Eucalyptus grandis Eucgr.K01228 I 0.000
evm.TU.supercontig_128.20 Carica papaya evm.TU.supercontig_128.20 I 0.000
F775_01324 Aegilops tauschii F775_01324 I 0.000
F775_04018 Aegilops tauschii F775_04018 I 0.000
F775_22220 Aegilops tauschii F775_22220 I 0.000
F775_23219 Aegilops tauschii F775_23219 I 0.000
FEZ Arabidopsis thaliana AT1G26870 I 0.000
FEZ Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002274 I 0.000
gene03833-v1.0-hybrid Fragaria vesca gene03833-v1.0-hybrid I 0.000
GLYMA01G05680 Glycine max GLYMA01G05680 I 0.000
GLYMA02G11900 Glycine max GLYMA02G11900 I 0.000
GLYMA02G45371 Glycine max GLYMA02G45371 I 0.000
GLYMA08G41260 Glycine max GLYMA08G41260 I 0.000
GLYMA08G41995 Glycine max GLYMA08G41995 I 0.000
GLYMA13G05350 Glycine max GLYMA13G05350 I 0.000
GLYMA14G03441 Glycine max GLYMA14G03441 I 0.000
GLYMA15G40950 Glycine max GLYMA15G40950 I 0.000
GLYMA18G13574 Glycine max GLYMA18G13574 I 0.000
GLYMA18G15020 Glycine max GLYMA18G15020 I 0.000
GLYMA19G02580 Glycine max GLYMA19G02580 I 0.000
Gorai.001G091900 Gossypium raimondii Gorai.001G091900 I 0.000
Gorai.002G036700 Gossypium raimondii Gorai.002G036700 I 0.000
Gorai.004G270300 Gossypium raimondii Gorai.004G270300 I 0.000
Gorai.004G270400 Gossypium raimondii Gorai.004G270400 I 0.000
Gorai.005G141200 Gossypium raimondii Gorai.005G141200 I 0.000
Gorai.006G017700 Gossypium raimondii Gorai.006G017700 I 0.000
Gorai.009G357700 Gossypium raimondii Gorai.009G357700 I 0.000
Gorai.012G054800 Gossypium raimondii Gorai.012G054800 I 0.000
Gorai.013G085000 Gossypium raimondii Gorai.013G085000 I 0.000
GRMZM2G100593 Zea mays GRMZM2G100593 I 0.000
GRMZM2G112548 Zea mays GRMZM2G112548 I 0.000
GRMZM2G152543 Zea mays GRMZM2G152543 I 0.000
GRMZM2G159094 Zea mays GRMZM2G159094 I 0.000
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I 0.000
GSMUA_Achr5G02170_001 Musa acuminata GSMUA_Achr5G02170_001 I 0.000
GSMUA_Achr6G02680_001 Musa acuminata GSMUA_Achr6G02680_001 I 0.000
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I 0.000
GSMUA_Achr7G00860_001 Musa acuminata GSMUA_Achr7G00860_001 I 0.000
JUB1 Arabidopsis thaliana AT2G43000 D 0.000
LjT46I09.50.nd Lotus japonicus LjT46I09.50.nd I 0.000
LPERR02G26510 Leersia perrieri LPERR02G26510 I 0.000
LPERR03G30390 Leersia perrieri LPERR03G30390 I 0.000
LPERR08G13170 Leersia perrieri LPERR08G13170 I 0.000
Lus10007263.g Linum usitatissimum Lus10007263.g I 0.000
Lus10015367.g Linum usitatissimum Lus10015367.g I 0.000
Lus10030478.g Linum usitatissimum Lus10030478.g I 0.000
Lus10031189.g Linum usitatissimum Lus10031189.g I 0.000
Lus10031767.g Linum usitatissimum Lus10031767.g I 0.000
Lus10036749.g Linum usitatissimum Lus10036749.g I 0.000
Lus10037178.g Linum usitatissimum Lus10037178.g I 0.000
MDP0000186765 Malus domestica MDP0000186765 I 0.000
MDP0000241821 Malus domestica MDP0000241821 I 0.000
mgf019629m Mimulus guttatus mgf019629m N 0.000
mgf023960m Mimulus guttatus mgf023960m I 0.000
mgf025649m Mimulus guttatus mgf025649m I 0.000
mgf026196m Mimulus guttatus mgf026196m I 0.000
MLOC_60079 Hordeum vulgare MLOC_60079 I 0.000
MTR_5g040420 Medicago truncatula MTR_5g040420 I 0.000
MTR_5g090970 Medicago truncatula MTR_5g090970 I 0.000
MTR_6g011860 Medicago truncatula MTR_6g011860 I 0.000
MTR_8g467490 Medicago truncatula MTR_8g467490 I 0.000
OB02G39340 Oryza brachyantha OB02G39340 I 0.000
OB08G23420 Oryza brachyantha OB08G23420 I 0.000
OBART02G32360 Oryza barthii OBART02G32360 I 0.000
OBART08G15880 Oryza barthii OBART08G15880 I 0.000
OGLUM02G33000 Oryza glumaepatula OGLUM02G33000 I 0.000
OGLUM03G35790 Oryza glumaepatula OGLUM03G35790 I 0.000
OGLUM08G16650 Oryza glumaepatula OGLUM08G16650 I 0.000
OLONG_016322 Oryza longistaminata OLONG_016322 I 0.000
OMERI02G31030 Oryza meridionalis OMERI02G31030 I 0.000
OMERI08G13180 Oryza meridionalis OMERI08G13180 I 0.000
ONIVA06G04660 Oryza nivara ONIVA06G04660 I 0.000
ONIVA08G17120 Oryza nivara ONIVA08G17120 I 0.000
OPUNC02G29910 Oryza punctata OPUNC02G29910 I 0.000
OPUNC08G13940 Oryza punctata OPUNC08G13940 I 0.000
orange1.1g015827m.g Citrus sinensis orange1.1g015827m.g I 0.000
orange1.1g021785m.g Citrus sinensis orange1.1g021785m.g I 0.000
orange1.1g046948m.g Citrus sinensis orange1.1g046948m.g I 0.000
orange1.1g047852m.g Citrus sinensis orange1.1g047852m.g I 0.000
ORGLA02G0278900 Oryza glaberrima ORGLA02G0278900 I 0.000
ORUFI02G34050 Oryza rufipogon ORUFI02G34050 I 0.000
ORUFI08G17800 Oryza rufipogon ORUFI08G17800 I 0.000
OS02G0745250 Oryza sativa OS02G0745250 I 0.000
OS08G0436700 Oryza sativa OS08G0436700 I 0.000
Pavir.Aa00706 Panicum virgatum Pavir.Aa00706 I 0.000
Pavir.Ab02998 Panicum virgatum Pavir.Ab02998 I 0.000
Pavir.Bb02181 Panicum virgatum Pavir.Bb02181 I 0.000
Pavir.Fa00893 Panicum virgatum Pavir.Fa00893 I 0.000
Pavir.J03639 Panicum virgatum Pavir.J03639 I 0.000
Pavir.J08304 Panicum virgatum Pavir.J08304 I 0.000
Pavir.J26531 Panicum virgatum Pavir.J26531 I 0.000
PDK_20s1311871g001 Phoenix dactylifera PDK_20s1311871g001 I 0.000
PGSC0003DMG400001323 Solanum tuberosum PGSC0003DMG400001323 I 0.000
PGSC0003DMG400021119 Solanum tuberosum PGSC0003DMG400021119 I 0.000
PGSC0003DMG400031266 Solanum tuberosum PGSC0003DMG400031266 I 0.000
PGSC0003DMG400039898 Solanum tuberosum PGSC0003DMG400039898 I 0.000
PK01104.1 Cannabis sativa PK01104.1 I 0.000
PK17295.1 Cannabis sativa PK17295.1 N 0.000
PK18158.1 Cannabis sativa PK18158.1 I 0.000
Pm006506 Prunus mume Pm006506 I 0.000
Pm011037 Prunus mume Pm011037 I 0.000
Pm014764 Prunus mume Pm014764 I 0.000
Pm015876 Prunus mume Pm015876 I 0.000
POPTR_0001s11660 Populus trichocarpa POPTR_0001s11660 I 0.000
POPTR_0002s05820 Populus trichocarpa POPTR_0002s05820 I 0.000
POPTR_0004s12850 Populus trichocarpa POPTR_0004s12850 I 0.000
POPTR_0005s10080 Populus trichocarpa POPTR_0005s10080 I 0.000
POPTR_0005s22710 Populus trichocarpa POPTR_0005s22710 I 0.000
POPTR_0007s08340 Populus trichocarpa POPTR_0007s08340 I 0.000
POPTR_0017s11830 Populus trichocarpa POPTR_0017s11830 I 0.000
PRUPE_ppa016710mg Prunus persica PRUPE_ppa016710mg I 0.000
PRUPE_ppa022043mg Prunus persica PRUPE_ppa022043mg I 0.000
PRUPE_ppa022278mg Prunus persica PRUPE_ppa022278mg I 0.000
SapurV1A.0076s0070 Salix purpurea SapurV1A.0076s0070 I 0.000
SapurV1A.0085s0430 Salix purpurea SapurV1A.0085s0430 I 0.000
SapurV1A.0094s0540 Salix purpurea SapurV1A.0094s0540 I 0.000
SapurV1A.0354s0230 Salix purpurea SapurV1A.0354s0230 I 0.000
SapurV1A.0552s0060 Salix purpurea SapurV1A.0552s0060 I 0.000
SapurV1A.2065s0010 Salix purpurea SapurV1A.2065s0010 I 0.000
SapurV1A.2645s0010 Salix purpurea SapurV1A.2645s0010 I 0.000
Sb02g024593 Sorghum bicolor Sb02g024593 I 0.000
Sb04g028015 Sorghum bicolor Sb04g028015 I 0.000
Sb07g021400 Sorghum bicolor Sb07g021400 I 0.000
Si015514m.g Setaria italica Si015514m.g I 0.000
Si019308m.g Setaria italica Si019308m.g I 0.000
Si032144m.g Setaria italica Si032144m.g I 0.000
Si036447m.g Setaria italica Si036447m.g I 0.000
Solyc02g069960.2 Solanum lycopersicum Solyc02g069960.2 I 0.000
Solyc02g087920.2 Solanum lycopersicum Solyc02g087920.2 I 0.000
Solyc05g007550.1 Solanum lycopersicum Solyc05g007550.1 I 0.000
TCM_001955 Theobroma cacao TCM_001955 I 0.000
TCM_018508 Theobroma cacao TCM_018508 I 0.000
TCM_032393 Theobroma cacao TCM_032393 I 0.000
Thhalv10007709m.g Eutrema salsugineum Thhalv10007709m.g I 0.000
Thhalv10017054m.g Eutrema salsugineum Thhalv10017054m.g I 0.000
Thhalv10019631m.g Eutrema salsugineum Thhalv10019631m.g I 0.000
Thhalv10027860m.g Eutrema salsugineum Thhalv10027860m.g I 0.000
Traes_2AS_C73DE621D Triticum aestivum Traes_2AS_C73DE621D I 0.000
Traes_2BS_2244C64CC Triticum aestivum Traes_2BS_2244C64CC I 0.000
Traes_2BS_3B6ABF5E6 Triticum aestivum Traes_2BS_3B6ABF5E6 I 0.000
Traes_2DS_8C3F6A558 Triticum aestivum Traes_2DS_8C3F6A558 I 0.000
Traes_2DS_E2F2E9EAF Triticum aestivum Traes_2DS_E2F2E9EAF I 0.000
Traes_5AL_F35B9FF8E Triticum aestivum Traes_5AL_F35B9FF8E I 0.000
Traes_5BL_2131D2B17 Triticum aestivum Traes_5BL_2131D2B17 I 0.000
Traes_5BL_38DFDFE41 Triticum aestivum Traes_5BL_38DFDFE41 I 0.000
Traes_5DL_0713E8429 Triticum aestivum Traes_5DL_0713E8429 I 0.000
Traes_6AL_0D7866801 Triticum aestivum Traes_6AL_0D7866801 I 0.000
Traes_6BL_A169A3ECB Triticum aestivum Traes_6BL_A169A3ECB I 0.000
Traes_6DL_DA233B945 Triticum aestivum Traes_6DL_DA233B945 I 0.000
TRIUR3_01901 Triticum urartu TRIUR3_01901 I 0.000
TRIUR3_04556 Triticum urartu TRIUR3_04556 I 0.000
TRIUR3_04557 Triticum urartu TRIUR3_04557 I 0.000
TRIUR3_04558 Triticum urartu TRIUR3_04558 N 0.000
TRIUR3_04784 Triticum urartu TRIUR3_04784 I 0.000
VIT_01s0026g02360 Vitis vinifera VIT_01s0026g02360 I 0.000
VIT_19s0027g00840 Vitis vinifera VIT_19s0027g00840 I 0.000
VIT_19s0027g00860 Vitis vinifera VIT_19s0027g00860 I 0.000
VIT_19s0027g00870 Vitis vinifera VIT_19s0027g00870 I 0.000
VIT_19s0027g00880 Vitis vinifera VIT_19s0027g00880 I 0.000
VIT_19s0027g00910 Vitis vinifera VIT_19s0027g00910 I 0.000