CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cphx
(
Rattus norvegicus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSRNOG00000025433
T215449_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Cphx1
M00533_2.00
Mus musculus
WKAKNNNNNN
NNNNNNMTMW
PBM
Berger et al.(2008)
Cphx_3484
0.832
0.804
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000033244
Homeodomain
35
90
SKPRHKFTNDELKRLKQEFKCTPYPDFTTRDELARQFRCQVDVIDNWFQNKRARTP
ENSRNOP00000071042
Homeodomain
20
75
SKPRHKFTNDELKRLKQEFKCTPYPDFTTRDELARQFRCQVDVIDNWFQNKRARTP
Links
Other
Homeodomain
family TFs
Other
Rattus norvegicus
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Alligator_sinensis_CCG010485.1
Alligator sinensis
Alligator_sinensis_CCG010485.1
I
Cmyd_10006231
Chelonia mydas
Cmyd_10006231
I
ENSAMEG00000001482
Ailuropoda melanoleuca
ENSAMEG00000001482
I
ENSAMXG00000004952
Astyanax mexicanus
ENSAMXG00000004952
I
ENSCSAG00000014744
Chlorocebus sabaeus
ENSCSAG00000014744
I
ENSMEUG00000000043
Macropus eugenii
ENSMEUG00000000043
I
ENSMPUG00000009522
Mustela putorius furo
ENSMPUG00000009522
I
ENSNLEG00000013211
Nomascus leucogenys
ENSNLEG00000013211
I
ENSP00000358092
Macaca fascicularis
ENSP00000358092
I
ENSPANG00000016727
Papio anubis
ENSPANG00000016727
I
ENSPPYG00000016879
Pongo abelii
ENSPPYG00000016879
I
ENSPSIG00000002661
Pelodiscus sinensis
ENSPSIG00000002661
I
ENSSHAG00000010080
Sarcophilus harrisii
ENSSHAG00000010080
I
ENSSTOG00000016505
Ictidomys tridecemlineatus
ENSSTOG00000016505
I
ENSTNIG00000012300
Tetraodon nigroviridis
ENSTNIG00000012300
I
ENSTSYG00000011666
Tarsius syrichta
ENSTSYG00000011666
I
Myotis_brandtii_PRDM1_10034696
Myotis brandtii
Myotis_brandtii_PRDM1_10034696
I
Prdm1
Rattus norvegicus
ENSRNOG00000000323
I
PRDM1
Canis familiaris
ENSCAFG00000003694
I
PRDM1
Callithrix jacchus
ENSCJAG00000006332
I
PRDM1
Cavia porcellus
ENSCPOG00000014064
I
PRDM1
Erinaceus europaeus
ENSEEUG00000013222
I
PRDM1
Tursiops truncatus
ENSTTRG00000012894
I
PRDM1
Echinops telfairi
ENSETEG00000019669
I
PRDM1
Felis catus
ENSFCAG00000010755
I
PRDM1
Tupaia belangeri
ENSTBEG00000004089
I
PRDM1
Homo sapiens
ENSG00000057657
D
PRDM1
Sus scrofa
ENSSSCG00000004369
I
PRDM1
Gorilla gorilla
ENSGGOG00000001929
I
PRDM1
Sorex araneus
ENSSARG00000004079
I
PRDM1
Monodelphis domestica
ENSMODG00000018029
I
PRDM1
Pteropus vampyrus
ENSPVAG00000011732
I
PRDM1
Pan troglodytes
ENSPTRG00000018457
I
PRDM1
Loxodonta africana
ENSLAFG00000013436
I
PRDM1
Microcebus murinus
ENSMICG00000010329
I
PRDM1
Myotis lucifugus
ENSMLUG00000014085
I
PRDM1
Ochotona princeps
ENSOPRG00000006055
I
PRDM1
Otolemur garnettii
ENSOGAG00000014036
I
PRDM1
Oryctolagus cuniculus
ENSOCUG00000015495
I
PRDM1
Ornithorhynchus anatinus
ENSOANG00000004176
I
PRDM1
Macaca mulatta
ENSMMUG00000021401
I
Prdm1
Mus musculus
ENSMUSG00000038151
D