ORGLA10G0115700 (Oryza glaberrima)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ORGLA10G0115700 T221875_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.837 0.911
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.837 0.911
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.837 0.911
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.832 0.875
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.832 0.875
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA10G0115700.1 Homeodomain 28 87

Links

Other Homeodomain family TFs
Other Oryza glaberrima TFs

332 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29711.m000322 Ricinus communis 29711.m000322 I 0.000
29830.m001386 Ricinus communis 29830.m001386 I 0.000
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I 0.000
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I 0.000
BGIOSGA008112 Oryza indica BGIOSGA008112 I 0.000
bHLH11 Vitis vinifera VIT_04s0023g03430 I 0.000
bHLH121 Vitis vinifera VIT_03s0038g01790 I 0.000
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I 0.000
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I 0.000
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I 0.000
Cla014511 Citrullus lanatus Cla014511 I 0.000
Cucsa.043580 Cucumis sativus Cucsa.043580 I 0.000
Cucsa.169240 Cucumis sativus Cucsa.169240 I 0.000
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I 0.000
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I 0.000
GLYMA08G15740 Glycine max GLYMA08G15740 I 0.000
GLYMA12G02740 Glycine max GLYMA12G02740 I 0.000
GLYMA15G29630 Glycine max GLYMA15G29630 I 0.000
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I 0.000
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I 0.000
Lus10028456.g Linum usitatissimum Lus10028456.g I 0.000
Lus10041908.g Linum usitatissimum Lus10041908.g I 0.000
MDP0000275844 Malus domestica MDP0000275844 I 0.000
mgf017107m Mimulus guttatus mgf017107m I 0.000
OPUNC02G13570 Oryza punctata OPUNC02G13570 I 0.000
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I 0.000
OS02G0433600 Oryza sativa OS02G0433600 I 0.000
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I 0.000
PK18401.1 Cannabis sativa PK18401.1 D 0.000
Pm021043 Prunus mume Pm021043 I 0.000
Pm026758 Prunus mume Pm026758 I 0.000
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I 0.000
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I 0.000
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I 0.000
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I 0.000
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I 0.000
TCM_000204 Theobroma cacao TCM_000204 I 0.000
TCM_006692 Theobroma cacao TCM_006692 I 0.000