ORUFI03G06390 (Oryza rufipogon)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ORUFI03G06390 T221907_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.845 0.768
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.822 0.696
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.822 0.696
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.812 0.750
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.812 0.750
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.812 0.750
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.812 0.750
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.808 0.714
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.808 0.714
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.808 0.714
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.808 0.714
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.790 0.732
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.790 0.732
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.790 0.732
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.790 0.732
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.754 0.625
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.754 0.625
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.751 0.661
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.751 0.661
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.749 0.625
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.749 0.625
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.687 0.714
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.687 0.714
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.667 0.696
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.667 0.696
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI03G06390.1 Homeodomain 71 126

Links

Other Homeodomain family TFs
Other Oryza rufipogon TFs

802 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29669.m000844 Ricinus communis 29669.m000844 I
30170.m014386 Ricinus communis 30170.m014386 I
AC186524.3_FG005 Zea mays AC186524.3_FG005 N
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I
BGIOSGA008782 Oryza indica BGIOSGA008782 N
BGIOSGA023639 Oryza indica BGIOSGA023639 I
Bo5g030580 Brassica oleracea Bo5g030580 I
Bo7g014280 Brassica oleracea Bo7g014280 I
Bo7g061420 Brassica oleracea Bo7g061420 I
Bo8g070350 Brassica oleracea Bo8g070350 I
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I
Bra025838 Brassica rapa Bra025838 I
Bra037266 Brassica rapa Bra037266 I
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I
Carubv10010586m.g Capsella rubella Carubv10010586m.g I
Carubv10012681m.g Capsella rubella Carubv10012681m.g I
Carubv10014808m.g Capsella rubella Carubv10014808m.g I
cassava17389.m1 Manihot esculenta cassava17389.m1 I
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I
Ca_09896 Cicer arietinum Ca_09896 I
Ca_10725 Cicer arietinum Ca_10725 I
Ca_19340 Cicer arietinum Ca_19340 I
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I
Cla009093 Citrullus lanatus Cla009093 I
Cla018386 Citrullus lanatus Cla018386 I
Cla023817 Citrullus lanatus Cla023817 I
Cucsa.067200 Cucumis sativus Cucsa.067200 I
Cucsa.272190 Cucumis sativus Cucsa.272190 I
Cucsa.323100 Cucumis sativus Cucsa.323100 I
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I
F775_27510 Aegilops tauschii F775_27510 I
F775_30706 Aegilops tauschii F775_30706 I
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I
GLYMA01G28820 Glycine max GLYMA01G28820 I
GLYMA03G08270 Glycine max GLYMA03G08270 I
GLYMA04G01840 Glycine max GLYMA04G01840 I
GLYMA06G01970 Glycine max GLYMA06G01970 I
GLYMA09G33070 Glycine max GLYMA09G33070 I
GLYMA16G22060 Glycine max GLYMA16G22060 I
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I
GRMZM2G013821 Zea mays GRMZM2G013821 N
GRMZM2G066528 Zea mays GRMZM2G066528 I
GRMZM2G144398 Zea mays GRMZM2G144398 N
GRMZM2G145968 Zea mays GRMZM2G145968 N
GRMZM2G156785 Zea mays GRMZM2G156785 N
GRMZM2G162284 Zea mays GRMZM2G162284 I
GRMZM5G834758 Zea mays GRMZM5G834758 I
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I
HCOI01912600 Haemonchus contortus HCOI01912600 I
HCOI01913300 Haemonchus contortus HCOI01913300 I
HMGB1 Vitis vinifera VIT_08s0007g02200 I
HMGB2 Arabidopsis thaliana AT1G20693 I
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I
HMGB3 Arabidopsis thaliana AT1G20696 I
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I
HMGB4 Arabidopsis thaliana AT2G17560 I
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I
LPERR02G22240 Leersia perrieri LPERR02G22240 N
LPERR06G23570 Leersia perrieri LPERR06G23570 I
LPERR09G14820 Leersia perrieri LPERR09G14820 I
Lus10012252.g Linum usitatissimum Lus10012252.g I
Lus10016025.g Linum usitatissimum Lus10016025.g I
Lus10028298.g Linum usitatissimum Lus10028298.g I
Lus10040192.g Linum usitatissimum Lus10040192.g I
MDP0000275042 Malus domestica MDP0000275042 I
MDP0000362980 Malus domestica MDP0000362980 I
MDP0000607529 Malus domestica MDP0000607529 I
MDP0000757111 Malus domestica MDP0000757111 I
mgf000913m Mimulus guttatus mgf000913m I
mgf006113m Mimulus guttatus mgf006113m I
mgf008076m Mimulus guttatus mgf008076m I
mgf009330m Mimulus guttatus mgf009330m I
mgf014518m Mimulus guttatus mgf014518m I
mgf016363m Mimulus guttatus mgf016363m I
mgf016608m Mimulus guttatus mgf016608m I
MLOC_57633 Hordeum vulgare MLOC_57633 I
MLOC_78556 Hordeum vulgare MLOC_78556 I
MTR_5g024180 Medicago truncatula MTR_5g024180 I
MTR_8g073345 Medicago truncatula MTR_8g073345 I
OB02G34710 Oryza brachyantha OB02G34710 N
OB06G35870 Oryza brachyantha OB06G35870 I
OB09G25530 Oryza brachyantha OB09G25530 I
OBART02G27340 Oryza barthii OBART02G27340 N
OBART06G28090 Oryza barthii OBART06G28090 I
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I
OLONG_000335 Oryza longistaminata OLONG_000335 N
OLONG_007465 Oryza longistaminata OLONG_007465 I
OMERI02G26620 Oryza meridionalis OMERI02G26620 N
OMERI06G28030 Oryza meridionalis OMERI06G28030 I
OMERI09G14100 Oryza meridionalis OMERI09G14100 I
ONIVA02G29880 Oryza nivara ONIVA02G29880 N
ONIVA06G31070 Oryza nivara ONIVA06G31070 I
ONIVA09G20030 Oryza nivara ONIVA09G20030 I
OPUNC02G25020 Oryza punctata OPUNC02G25020 N
OPUNC06G25640 Oryza punctata OPUNC06G25640 I
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I
OS02G0670400 Oryza sativa OS02G0670400 N
OS06G0728000 Oryza sativa OS06G0728000 I
OS09G0551600 Oryza sativa OS09G0551600 I
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I
Pavir.Ga01019 Panicum virgatum Pavir.Ga01019 N
Pavir.Gb00881 Panicum virgatum Pavir.Gb00881 N
Pavir.J04920 Panicum virgatum Pavir.J04920 I
Pavir.J38684 Panicum virgatum Pavir.J38684 N
Pavir.J40489 Panicum virgatum Pavir.J40489 N
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I
PK11149.1 Cannabis sativa PK11149.1 I
PK29786.1 Cannabis sativa PK29786.1 I
Pm002934 Prunus mume Pm002934 I
Pm018913 Prunus mume Pm018913 I
Pm026798 Prunus mume Pm026798 I
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I
Sb02g032140 Sorghum bicolor Sb02g032140 I
Sb04g032180 Sorghum bicolor Sb04g032180 N
Sb10g030910 Sorghum bicolor Sb10g030910 I
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I
Si007288m.g Setaria italica Si007288m.g I
Si018635m.g Setaria italica Si018635m.g N
Si031512m.g Setaria italica Si031512m.g I
SNAPOd2T00000370001 Oikopleura dioica SNAPOd2T00000370001 N
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I
TCM_000068 Theobroma cacao TCM_000068 I
TCM_021706 Theobroma cacao TCM_021706 I
TCM_034406 Theobroma cacao TCM_034406 I
TCM_042534 Theobroma cacao TCM_042534 I
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I
TRIUR3_13577 Triticum urartu TRIUR3_13577 I
TRIUR3_27273 Triticum urartu TRIUR3_27273 I
TRIUR3_34670 Triticum urartu TRIUR3_34670 I
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I