CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Myotis_brandtii_Pitx3_10025920 *(Myotis brandtii)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	Myotis_brandtii_Pitx3_10025920	T226434_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PITX2 M00313_2.00	Homo sapiens	NWAAKHYN	NRDMTTWN	PBM Barrera et al.(2016) PITX2_REF	0.672	1.000
Pitx3 M00428_2.00	Mus musculus	NTAAKCYN	NRGMTTAN	PBM Berger et al.(2008) Pitx3_3497	0.672	1.000
Pitx2 M00440_2.00	Mus musculus	NTAATCCN	NGGATTAN	PBM Berger et al.(2008) Pitx2_2274	0.672	1.000
PITX3 M03111_2.00	Homo sapiens	NHTAATCCN	NGGATTADN	SELEX Jolma et al.(2013) PITX3_1	0.672	1.000
PITX2 M05229_2.00	Homo sapiens	NTAAKCCN	NGGMTTAN	SELEX Yin et al.(2017) PITX2_eDBD_HT-SELEX	0.672	1.000
PITX2 M05231_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) PITX2_FL_HT-SELEX	0.672	1.000
PITX3 M04997_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) PITX3_eDBD_HT-SELEX	0.672	1.000
PITX2 M10720_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PITX2_Q2	0.672	1.000
PITX2 M10721_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PITX2_Q4	0.672	1.000
PITX2 M10722_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PITX2_Q6	0.672	1.000
PITX3 M10660_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PITX3_Q2	0.672	1.000
PITX3 M10661_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PITX3_Q3_01	0.672	1.000
PITX3 M10662_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PITX3_Q3	0.672	1.000
PITX2 M00314_2.00	Homo sapiens	NTAATMYN	NRKATTAN	PBM Barrera et al.(2016) PITX2_T114P	0.672	1.000
PITX2 M05230_2.00	Homo sapiens	HTAATCCN	NGGATTAD	SELEX Yin et al.(2017) PITX2_eDBD_Methyl-HT-SELEX	0.672	1.000
PITX2 M05232_2.00	Homo sapiens	YTAATCCY	RGGATTAR	SELEX Yin et al.(2017) PITX2_FL_Methyl-HT-SELEX	0.672	1.000
PITX3 M04998_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) PITX3_eDBD_Methyl-HT-SELEX	0.672	1.000
PITX2 M00310_2.00	Homo sapiens	HTAATCYN	NRGATTAD	PBM Barrera et al.(2016) PITX2_L100Q	0.672	0.980
Pitx1 M00415_2.00	Mus musculus	NTAATCYNN	NNRGATTAN	PBM Berger et al.(2008) Pitx1_2312	0.672	0.959
PITX1 M03082_2.00	Homo sapiens	NHTAATCCN	NGGATTADN	SELEX Jolma et al.(2013) PITX1_1	0.672	0.959
PITX1 M03083_2.00	Homo sapiens	NHTAATCCN	NGGATTADN	SELEX Jolma et al.(2013) PITX1_2	0.672	0.959
PITX1 M03084_2.00	Homo sapiens	HTAATCCN	NGGATTAD	SELEX Jolma et al.(2013) PITX1_3	0.672	0.959
PITX1 M04928_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) PITX1_eDBD_HT-SELEX	0.672	0.959
PITX1 M04930_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) PITX1_FL_HT-SELEX	0.672	0.959
Pitx1 M09182_2.00	Mus musculus	NYWAAKCCYH	DRGGMTTWRN	Misc Kulakovskiy et al.(2013) PITX1_MOUSE.H11MO.0.C	0.672	0.959
PITX1 M10640_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PITX1_Q4	0.672	0.959
PITX1 M10641_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PITX1_Q6	0.672	0.959
PITX1 M04929_2.00	Homo sapiens	NTAAKCCN	NGGMTTAN	SELEX Yin et al.(2017) PITX1_eDBD_Methyl-HT-SELEX	0.672	0.959
PITX1 M04931_2.00	Homo sapiens	HTAATCCN	NGGATTAD	SELEX Yin et al.(2017) PITX1_FL_Methyl-HT-SELEX	0.672	0.959
Ptx1 M02123_2.00	Drosophila melanogaster	NTAATCYNN	NNRGATTAN	PBM Weirauch et al.(2014) pTH5644	0.671	0.939
Ptx1 M00562_2.00	Drosophila melanogaster	NYTAATCCBN	NVGGATTARN	PBM Busser et al.(2012a) Ptx1	0.671	0.939
Ptx1 M03842_2.00	Drosophila melanogaster	NTAATCCN	NGGATTAN	SELEX Nitta et al.(2015) Ptx1_1	0.671	0.939
Ptx1 M03843_2.00	Drosophila melanogaster	NTAATCCN	NGGATTAN	SELEX Nitta et al.(2015) Ptx1_2	0.671	0.939
Ptx1 M03844_2.00	Drosophila melanogaster	NCGHTAATCCN	NGGATTADCGN	SELEX Nitta et al.(2015) Ptx1_3	0.671	0.939
Ptx1 M06521_2.00	Drosophila melanogaster	YTAATCC	GGATTAR	B1H Mathelier et al.(2014) MA0201.1	0.671	0.939
Ptx1 M06319_2.00	Drosophila melanogaster	YTAATCC	GGATTAR	B1H Zhu et al.(2011) Ptx1_Cell_FBgn0020912	0.671	0.939
Ptx1 M06320_2.00	Drosophila melanogaster	NYTAATCC	GGATTARN	B1H Zhu et al.(2011) Ptx1_SOLEXA_FBgn0020912	0.671	0.939
PITX2 M00311_2.00	Homo sapiens	TTAATCCY	RGGATTAA	PBM Barrera et al.(2016) PITX2_R108H	0.667	0.980
CBG01820 M01241_2.00	Caenorhabditis briggsae	NTAATCCN	NGGATTAN	PBM Lambert et al.(2019) pTH11454	0.662	0.796
PITX2 M00312_2.00	Homo sapiens	NNNTATWAATTNN	NNAATTWATANNN	PBM Barrera et al.(2016) PITX2_R130W	0.639	0.980
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Myotis_brandtii_Pitx3_10025920	Homeodomain	63	113	RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKXX

Links
Other Homeodomain family TFs
Other *Myotis brandtii* TFs

297 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL010903	Aedes aegypti	AAEL010903	N	0.000
AAH41216	Xenopus laevis	AAH41216	N	0.000
AALB002196	Anopheles albimanus	AALB002196	N	0.000
AARA006951	Anopheles arabiensis	AARA006951	N	0.000
AATE020748	Anopheles atroparvus	AATE020748	N	0.000
AC123471.1	Rattus norvegicus	ENSRNOG00000018377	N	0.000
ACAC_0000207501	Angiostrongylus cantonensis	ACAC_0000207501	N	0.000
ACEP21543	Atta cephalotes	ACEP21543	N	0.000
ACHR000824	Anopheles christyi	ACHR000824	N	0.000
ACOM023536	Anopheles coluzzii	ACOM023536	N	0.000
ACUA002517	Anopheles culicifacies	ACUA002517	N	0.000
ACYPI008028	Acyrthosiphon pisum	ACYPI008028	N	0.000
ADAC004863	Anopheles darlingi	ADAC004863	N	0.000
ADIR010513	Anopheles dirus	ADIR010513	N	0.000
AEPI007457	Anopheles epiroticus	AEPI007457	N	0.000
AFAF004631	Anopheles farauti	AFAF004631	N	0.000
AFUN008276	Anopheles funestus	AFUN008276	N	0.000
AGAP001994	Anopheles gambiae	AGAP001994	N	0.000
ALUE_0000987201	Ascaris lumbricoides	ALUE_0000987201	N	0.000
AMAM007470	Anopheles maculatus	AMAM007470	N	0.000
AMEC010472	Anopheles melas	AMEC010472	N	0.000
AMEM015770	Anopheles merus	AMEM015770	N	0.000
AMIN003302	Anopheles minimus	AMIN003302	N	0.000
ANCCAN_03785	Ancylostoma caninum	ANCCAN_03785	N	0.000
ANCCAN_09575	Ancylostoma caninum	ANCCAN_09575	N	0.000
ANCCEY_02937	Ancylostoma ceylanicum	ANCCEY_02937	N	0.000
ANCDUO_12071	Ancylostoma duodenale	ANCDUO_12071	N	0.000
Aqu1.224100	Amphimedon queenslandica	Aqu1.224100	N	0.000
AQUA007127	Anopheles quadriannulatus	AQUA007127	N	0.000
ASIM_0001578601	Anisakis simplex	ASIM_0001578601	N	0.000
ASIM_0001639001	Anisakis simplex	ASIM_0001639001	N	0.000
ASIS021704	Anopheles sinensis	ASIS021704	N	0.000
ASTEI00336	Anopheles stephensi	ASTEI00336	N	0.000
ASU_02248	Ascaris suum	ASU_02248	N	0.000
A_05744	Schistosoma haematobium	A_05744	N	0.000
BGIBMGA009228	Bombyx mori	BGIBMGA009228	N	0.000
BGLB013830	Biomphalaria glabrata	BGLB013830	N	0.000
Bm7076	Brugia malayi	Bm7076	N	0.000
CapteG156119	Capitella teleta	CapteG156119	N	0.000
CBG09815	Caenorhabditis briggsae	CBG09815	N	0.000
Cflo_00654--XP_395543.3_APIME	Camponotus floridanus	Cflo_00654--XP_395543.3_APIME	N	0.000
CLEC001104	Cimex lectularius	CLEC001104	N	0.000
CLEC007658	Cimex lectularius	CLEC007658	N	0.000
CLEC009203	Cimex lectularius	CLEC009203	N	0.000
CPIJ007400	Culex quinquefasciatus	CPIJ007400	N	0.000
CPIJ018416	Culex quinquefasciatus	CPIJ018416	N	0.000
CpipJ_CPIJ007400	Culex pipiens	CpipJ_CPIJ007400	N	0.000
CpipJ_CPIJ018416	Culex pipiens	CpipJ_CPIJ018416	N	0.000
csin103376	Clonorchis sinensis	csin103376	N	0.000
D915_15883	Fasciola hepatica	D915_15883	N	0.000
D918_01415	Trichuris suis	D918_01415	N	0.000
dalao	Drosophila melanogaster	FBgn0030093	N	0.000
DAPPUDRAFT_305068	Daphnia pulex	DAPPUDRAFT_305068	N	0.000
DME_0000063901	Dracunculus medinensis	DME_0000063901	N	0.000
ECANG7_05376	Echinococcus canadensis	ECANG7_05376	N	0.000
EEL_0000522201	Elaeophora elaphi	EEL_0000522201	N	0.000
EmuJ_000113200	Echinococcus multilocularis	EmuJ_000113200	N	0.000
ENSCING00000007774	Ciona intestinalis	ENSCING00000007774	N	0.000
ENSCJAG00000006608	Callithrix jacchus	ENSCJAG00000006608	N	0.000
ENSCSAVG00000010367	Ciona savignyi	ENSCSAVG00000010367	N	0.000
ENSFCAG00000026463	Felis catus	ENSFCAG00000026463	N	0.000
ENSGGOG00000024929	Gorilla gorilla	ENSGGOG00000024929	N	0.000
ENSGGOG00000026277	Gorilla gorilla	ENSGGOG00000026277	N	0.000
ENSGMOG00000002045	Gadus morhua	ENSGMOG00000002045	N	0.000
ENSOCUG00000016848	Oryctolagus cuniculus	ENSOCUG00000016848	N	0.000
ENSONIG00000006293	Oreochromis niloticus	ENSONIG00000006293	N	0.000
ENSPFOG00000009890	Poecilia formosa	ENSPFOG00000009890	N	0.000
ENSPFOG00000019561	Poecilia formosa	ENSPFOG00000019561	N	0.000
ENSPPYG00000012585	Pongo abelii	ENSPPYG00000012585	N	0.000
ENSXMAG00000002642	Xiphophorus maculatus	ENSXMAG00000002642	N	0.000
EVEC_0000378901	Enterobius vermicularis	EVEC_0000378901	N	0.000
fgenesh2_pg.scaffold_137000001	Branchiostoma floridae	fgenesh2_pg.scaffold_137000001	N	0.000
GA26137	Drosophila pseudoobscura	FBgn0247513	N	0.000
GB50847	Apis mellifera	GB50847	N	0.000
GD16931	Drosophila simulans	FBgn0188511	N	0.000
GE15824	Drosophila yakuba	FBgn0233388	N	0.000
GF19131	Drosophila ananassae	FBgn0096142	N	0.000
GG18291	Drosophila erecta	FBgn0110507	N	0.000
GH12291	Drosophila grimshawi	FBgn0119770	N	0.000
GI15536	Drosophila mojavensis	FBgn0138285	N	0.000
GJ14880	Drosophila virilis	FBgn0202084	N	0.000
GK25765	Drosophila willistoni	FBgn0227724	N	0.000
GL26801	Drosophila persimilis	FBgn0164382	N	0.000
GM13722	Drosophila sechellia	FBgn0168653	N	0.000
GPLIN_000239300	Globodera pallida	GPLIN_000239300	N	0.000
HCOI00022200	Haemonchus contortus	HCOI00022200	N	0.000
HCOI00569400	Haemonchus contortus	HCOI00569400	N	0.000
HDID_0000207001	Hymenolepis diminuta	HDID_0000207001	N	0.000
HelroG188630	Helobdella robusta	HelroG188630	N	0.000
HHAL002088-PA	Halyomorpha halys	HHAL002088-PA	N	0.000
HHAL007378-PA	Halyomorpha halys	HHAL007378-PA	N	0.000
HMEL010720	Heliconius melpomene	HMEL010720	N	0.000
HPBE_0000083501	Heligmosomoides bakeri	HPBE_0000083501	N	0.000
HPLM_0001658301	Haemonchus placei	HPLM_0001658301	N	0.000
ISCW021016	Ixodes scapularis	ISCW021016	N	0.000
KGM_12870	Danaus plexippus	KGM_12870	N	0.000
L596_g22461	Steinernema carpocapsae	L596_g22461	N	0.000
L798_00593	Zootermopsis nevadensis	L798_00593	N	0.000
L889_g3706	Steinernema feltiae	L889_g3706	N	0.000
L892_g30100	Steinernema scapterisci	L892_g30100	N	0.000
L898_g375	Steinernema monticolum	L898_g375	N	0.000
LCUP013669	Lucilia cuprina	LCUP013669	N	0.000
LDEC003494	Leptinotarsa decemlineata	LDEC003494	N	0.000
LLOJ006040	Lutzomyia longipalpis	LLOJ006040	N	0.000
LOAG_01279	Loa loa	LOAG_01279	N	0.000
LotgiG111061	Lottia gigantea	LotgiG111061	N	0.000
maker-nMf.1.1.scaf01126-augustus-gene-0.13	Meloidogyne floridensis	maker-nMf.1.1.scaf01126-augustus-gene-0.13	N	0.000
MCINX003696	Melitaea cinxia	MCINX003696	N	0.000
MCOS_0000928101	Mesocestoides corti	MCOS_0000928101	N	0.000
MDOA009352	Musca domestica	MDOA009352	N	0.000
MhA1_Contig1809.frz3.gene8	Meloidogyne hapla	MhA1_Contig1809.frz3.gene8	N	0.000
Minc14081	Meloidogyne incognita	Minc14081	N	0.000
ML45008a	Mnemiopsis leidyi	ML45008a	N	0.000
nAv.1.0.1.g03900	Acanthocheilonema viteae	nAv.1.0.1.g03900	N	0.000
nDi.2.2.2.g02092	Dirofilaria immitis	nDi.2.2.2.g02092	N	0.000
NECAME_16117	Necator americanus	NECAME_16117	N	0.000
NEMVEDRAFT_v1g177453	Nematostella vectensis	NEMVEDRAFT_v1g177453	N	0.000
nLs.2.1.2.g01047	Litomosoides sigmodontis	nLs.2.1.2.g01047	N	0.000
nOo.2.0.1.g01360	Onchocerca ochengi	nOo.2.0.1.g01360	N	0.000
NV11999	Nasonia vitripennis	NV11999	N	0.000
OESDEN_12607	Oesophagostomum dentatum	OESDEN_12607	N	0.000
OESDEN_21929	Oesophagostomum dentatum	OESDEN_21929	N	0.000
OFLC_0001285101	Onchocerca flexuosa	OFLC_0001285101	N	0.000
PPA02543	Pristionchus pacificus	PPA02543	N	0.000
PPAI002058	Phlebotomus papatasi	PPAI002058	N	0.000
PXEA_0001727801	Protopolystoma xenopodis	PXEA_0001727801	N	0.000
RSKR_0000347900	Rhabditophanes kr3021	RSKR_0000347900	N	0.000
Sakowv30017721m.g	Saccoglossus kowalevskii	Sakowv30017721m.g	N	0.000
scaffold237-EXSNAP2012.36	Pristionchus exspectatus	scaffold237-EXSNAP2012.36	N	0.000
SCUD_0000923501	Schistosoma curassoni	SCUD_0000923501	N	0.000
Sjc_0000110	Schistosoma japonicum	Sjc_0000110	N	0.000
SMAR004982	Strigamia maritima	SMAR004982	N	0.000
SMARCE1	Gasterosteus aculeatus	ENSGACG00000018114	N	0.000
smarce1	Oryzias latipes	ENSORLG00000018629	N	0.000
smarce1	Tetraodon nigroviridis	ENSTNIG00000014009	N	0.000
smarce1	Takifugu rubripes	ENSTRUG00000012899	N	0.000
Smp_154640	Schistosoma mansoni	Smp_154640	N	0.000
SMTD_0000014601	Schistosoma mattheei	SMTD_0000014601	N	0.000
SMU15003232	Schmidtea mediterranea	SMU15003232	N	0.000
SMU15005679	Schmidtea mediterranea	SMU15005679	N	0.000
SMU15025606	Schmidtea mediterranea	SMU15025606	N	0.000
SMUV_0000644601	Syphacia muris	SMUV_0000644601	N	0.000
snap_masked-nMf.1.1.scaf27159-processed-gene-0.2	Meloidogyne floridensis	snap_masked-nMf.1.1.scaf27159-processed-gene-0.2	N	0.000
SPU_009282	Strongylocentrotus purpuratus	SPU_009282	N	0.000
SROB_0000607501	Schistosoma rodhaini	SROB_0000607501	N	0.000
SSLN_0001888901	Schistocephalus solidus	SSLN_0001888901	N	0.000
SVUK_0000819801	Strongylus vulgaris	SVUK_0000819801	N	0.000
swsn-3	Caenorhabditis elegans	WBGene00022182	N	0.000
T265_02983	Opisthorchis viverrini	T265_02983	N	0.000
TASK_0000875901	Taenia asiatica	TASK_0000875901	N	0.000
TC007745	Tribolium castaneum	TC007745	N	0.000
TCLT_0000145301	Thelazia callipaeda	TCLT_0000145301	N	0.000
TELCIR_14354	Teladorsagia circumcincta	TELCIR_14354	N	0.000
TMUE_s0023006500	Trichuris muris	TMUE_s0023006500	N	0.000
TriadG53566	Trichoplax adhaerens	TriadG53566	N	0.000
TsM_000047400	Taenia solium	TsM_000047400	N	0.000
TTRE_0000149701	Trichuris trichiura	TTRE_0000149701	N	0.000
WBGene00245293	Onchocerca volvulus	WBGene00245293	N	0.000
WUBG_07283	Wuchereria bancrofti	WUBG_07283	N	0.000
XP_002158206.1	Hydra magnipapillata	XP_002158206.1	N	0.000
YQE_02381	Dendroctonus ponderosae	YQE_02381	N	0.000

Myotis_brandtii_Pitx3_10025920 (Myotis brandtii) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

297 Related TFs

Myotis_brandtii_Pitx3_10025920 **(Myotis brandtii)
Homeodomain**