Gorai.001G134800 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.001G134800 T228665_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.654 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G134800.1 Homeodomain 65 121
Gorai.001G134800.2 Homeodomain 65 121
Gorai.001G134800.3 Homeodomain 65 121
Gorai.001G134800.4 Homeodomain 65 121
Gorai.001G134800.5 Homeodomain 23 79

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC13 Arabidopsis lyrata fgenesh2_kg.1__3425__AT1G32870.2 I
ANAC13 Arabidopsis thaliana AT1G32870 D
Bo7g057730 Brassica oleracea Bo7g057730 I
Bostr.3359s0074 Boechera stricta Bostr.3359s0074 I
Bra012342 Brassica rapa Bra012342 I
Cagra.1443s0015 Capsella grandiflora Cagra.1443s0015 I
Carubv10008817m.g Capsella rubella Carubv10008817m.g I
cassava22173.valid.m1 Manihot esculenta cassava22173.valid.m1 I
Ciclev10000612m.g Citrus clementina Ciclev10000612m.g I
Cla013854 Citrullus lanatus Cla013854 I
Cla016588 Citrullus lanatus Cla016588 N
Cucsa.364130 Cucumis sativus Cucsa.364130 N
Eucgr.F02771 Eucalyptus grandis Eucgr.F02771 N
evm.TU.supercontig_26.135 Carica papaya evm.TU.supercontig_26.135 I
gene27539-v1.0-hybrid Fragaria vesca gene27539-v1.0-hybrid N
Gorai.005G076200 Gossypium raimondii Gorai.005G076200 I
Gorai.009G260000 Gossypium raimondii Gorai.009G260000 I
Lus10028713.g Linum usitatissimum Lus10028713.g I
MDP0000146969 Malus domestica MDP0000146969 I
MDP0000169485 Malus domestica MDP0000169485 I
MDP0000852271 Malus domestica MDP0000852271 I
mg018130m Mimulus guttatus mg018130m I
mgf015836m Mimulus guttatus mgf015836m I
PGSC0003DMG400016962 Solanum tuberosum PGSC0003DMG400016962 N
PGSC0003DMG400031149 Solanum tuberosum PGSC0003DMG400031149 I
Pm022358 Prunus mume Pm022358 N
POPTR_0002s06210 Populus trichocarpa POPTR_0002s06210 I
POPTR_0005s22180 Populus trichocarpa POPTR_0005s22180 I
PRUPE_ppa003410mg Prunus persica PRUPE_ppa003410mg N
SapurV1A.0134s0420 Salix purpurea SapurV1A.0134s0420 I
SapurV1A.0348s0040 Salix purpurea SapurV1A.0348s0040 I
Solyc04g072220.2 Solanum lycopersicum Solyc04g072220.2 I
Solyc12g056790.1 Solanum lycopersicum Solyc12g056790.1 I
TCM_036587 Theobroma cacao TCM_036587 I
Thhalv10007369m.g Eutrema salsugineum Thhalv10007369m.g I
VIT_18s0001g01820 Vitis vinifera VIT_18s0001g01820 I