PK17424.1 (Cannabis sativa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 PK17424.1 T230107_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.814 0.750
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.814 0.750
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.807 0.804
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.794 0.821
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.794 0.821
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.794 0.821
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.794 0.821
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.776 0.857
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.776 0.857
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.776 0.857
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.776 0.821
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.763 0.750
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.763 0.750
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.763 0.750
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.763 0.750
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.749 0.661
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.749 0.661
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.748 0.643
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.748 0.643
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.743 0.625
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.743 0.625
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.680 0.768
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.680 0.768
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.655 0.732
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.655 0.732
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.613 0.643
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.613 0.643
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK17424.1 Homeodomain 59 114

Links

Other Homeodomain family TFs
Other Cannabis sativa TFs

818 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000093601 Angiostrongylus cantonensis ACAC_0000093601 N 0.000
ACHR008505 Anopheles christyi ACHR008505 N 0.000
ACOC_0000334101 Angiostrongylus costaricensis ACOC_0000334101 N 0.000
ACUA020431 Anopheles culicifacies ACUA020431 N 0.000
AEPI010384 Anopheles epiroticus AEPI010384 N 0.000
AEPI010666 Anopheles epiroticus AEPI010666 N 0.000
ANCCAN_23849 Ancylostoma caninum ANCCAN_23849 N 0.000
ANCCAN_27026 Ancylostoma caninum ANCCAN_27026 N 0.000
ANCCEY_10891 Ancylostoma ceylanicum ANCCEY_10891 N 0.000
AQUA015309 Anopheles quadriannulatus AQUA015309 N 0.000
ASIM_0000060401 Anisakis simplex ASIM_0000060401 N 0.000
ASIM_0001450801 Anisakis simplex ASIM_0001450801 N 0.000
augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0 N 0.000
BGLB006778 Biomphalaria glabrata BGLB006778 N 0.000
Bo1g131210 Brassica oleracea Bo1g131210 N 0.000
BRADI2G50510 Brachypodium distachyon BRADI2G50510 N 0.000
BRADI3G23370 Brachypodium distachyon BRADI3G23370 N 0.000
Carubv10007218m.g Capsella rubella Carubv10007218m.g N 0.000
cassava13400.valid.m1 Manihot esculenta cassava13400.valid.m1 N 0.000
Ca_08015 Cicer arietinum Ca_08015 N 0.000
Ca_19697 Cicer arietinum Ca_19697 N 0.000
csin109617 Clonorchis sinensis csin109617 N 0.000
ENSOCUG00000013528 Oryctolagus cuniculus ENSOCUG00000013528 I 0.000
ENSPTRG00000017522 Pan troglodytes ENSPTRG00000017522 N 0.000
e_gw.11.656.1 Branchiostoma floridae e_gw.11.656.1 N 0.000
F775_07305 Aegilops tauschii F775_07305 N 0.000
F775_10961 Aegilops tauschii F775_10961 N 0.000
gene23926-v1.0-hybrid Fragaria vesca gene23926-v1.0-hybrid N 0.000
GI23625 Drosophila mojavensis FBgn0146351 N 0.000
GLYMA08G09430 Glycine max GLYMA08G09430 N 0.000
Gorai.003G184900 Gossypium raimondii Gorai.003G184900 I 0.000
GRMZM2G004334 Zea mays GRMZM2G004334 N 0.000
GRMZM2G123140 Zea mays GRMZM2G123140 I 0.000
GSMUA_Achr3G23090_001 Musa acuminata GSMUA_Achr3G23090_001 N 0.000
LjT36I04.40.nd Lotus japonicus LjT36I04.40.nd N 0.000
LOAG_18696 Loa loa LOAG_18696 N 0.000
maker-nMf.1.1.scaf28435-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf28435-augustus-gene-0.3 N 0.000
MDP0000690933 Malus domestica MDP0000690933 N 0.000
mgf006959m Mimulus guttatus mgf006959m N 0.000
Minc02159 Meloidogyne incognita Minc02159 N 0.000
NECAME_08983 Necator americanus NECAME_08983 N 0.000
nOo.2.0.1.g12002 Onchocerca ochengi nOo.2.0.1.g12002 N 0.000
nRc.2.0.1.g21365 Romanomermis culicivorax nRc.2.0.1.g21365 N 0.000
Ocbimv22024994m.g Octopus bimaculoides Ocbimv22024994m.g N 0.000
OLONG_008306 Oryza longistaminata OLONG_008306 N 0.000
OLONG_012459 Oryza longistaminata OLONG_012459 N 0.000
OLONG_017944 Oryza longistaminata OLONG_017944 N 0.000
OMERI08G08060 Oryza meridionalis OMERI08G08060 N 0.000
OS01G0788800 Oryza sativa OS01G0788800 N 0.000
Pavir.Fa02028 Panicum virgatum Pavir.Fa02028 N 0.000
PDK_20s1347391g002 Phoenix dactylifera PDK_20s1347391g002 N 0.000
PDK_20s1410161g001 Phoenix dactylifera PDK_20s1410161g001 N 0.000
PGSC0003DMG400007775 Solanum tuberosum PGSC0003DMG400007775 N 0.000
PGSC0003DMG400013263 Solanum tuberosum PGSC0003DMG400013263 N 0.000
PGSC0003DMG400019030 Solanum tuberosum PGSC0003DMG400019030 N 0.000
POPTR_0012s03550 Populus trichocarpa POPTR_0012s03550 N 0.000
scaffold61-EXSNAP2012.75 Pristionchus exspectatus scaffold61-EXSNAP2012.75 N 0.000
SINV22981 Solenopsis invicta SINV22981 N 0.000
SMTD_0001030501 Schistosoma mattheei SMTD_0001030501 N 0.000
T265_10172 Opisthorchis viverrini T265_10172 N 0.000
TCM_016582 Theobroma cacao TCM_016582 I 0.000
TLX3 Taeniopygia guttata ENSTGUG00000014966 N 0.000
TRAES3BF096700010CFD_g Triticum aestivum TRAES3BF096700010CFD_g N 0.000
TRAES3BF096700040CFD_g Triticum aestivum TRAES3BF096700040CFD_g N 0.000
Traes_1AS_CA75913B6 Triticum aestivum Traes_1AS_CA75913B6 N 0.000
Traes_1DL_9FB53E48A Triticum aestivum Traes_1DL_9FB53E48A N 0.000
Traes_1DS_AAEBFA9CC Triticum aestivum Traes_1DS_AAEBFA9CC N 0.000
Traes_2AL_AAEBFA9CC Triticum aestivum Traes_2AL_AAEBFA9CC N 0.000
Traes_3AL_F42853DA5 Triticum aestivum Traes_3AL_F42853DA5 N 0.000
Traes_6BL_4301B7F15 Triticum aestivum Traes_6BL_4301B7F15 N 0.000
Traes_6DL_D722B6E13 Triticum aestivum Traes_6DL_D722B6E13 N 0.000
TRIUR3_29318 Triticum urartu TRIUR3_29318 N 0.000
TRIUR3_32002 Triticum urartu TRIUR3_32002 N 0.000
VAX1 Loxodonta africana ENSLAFG00000018107 N 0.000
YQE_10731 Dendroctonus ponderosae YQE_10731 N 0.000