Lus10014994.g (Linum usitatissimum)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Lus10014994.g T243224_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.500 0.782
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.500 0.782
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.490 0.793
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.490 0.793
HSFB4
M06936_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFB4_col_a 		0.454 0.770
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.425 0.667
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.425 0.667
HSFC1
M00868_2.00 		Arabidopsis thaliana
NDTCBNNN
NNNVGAHN		 PBM
Franco-Zorrilla et al.(2014)
HSFC1 		0.396 0.632
HSFC1
M06943_2.00 		Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFC1_col_a 		0.396 0.632
HSFC1
M06944_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a 		0.396 0.632
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.391 0.609
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.388 0.655
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.388 0.655
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.388 0.667
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.388 0.667
HSFA6A
M06950_2.00 		Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_col_a 		0.385 0.621
HSFA6A
M06951_2.00 		Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a 		0.385 0.621
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.366 0.644
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.366 0.644
HSF1
M03329_2.00 		Homo sapiens
GAANVTTCBVGAA
TTCBVGAABNTTC		 SELEX
Jolma et al.(2013)
HSF1_1 		0.337 0.563
HSF1
M03330_2.00 		Homo sapiens
GAANRTTCBAGAA
TTCTVGAAYNTTC		 SELEX
Jolma et al.(2013)
HSF1_2 		0.337 0.563
HSF1
M05523_2.00 		Homo sapiens
VGAABVTTCBVGAWN
NWTCBVGAABVTTCB		 SELEX
Yin et al.(2017)
HSF1_eDBD_HT-SELEX 		0.337 0.563
HSF1
M05525_2.00 		Homo sapiens
VGAANRTTCKVGAAN
NTTCBMGAAYNTTCB		 SELEX
Yin et al.(2017)
HSF1_FL_HT-SELEX 		0.337 0.563
HSF1
M07977_2.00 		Homo sapiens
GDCSYGGGTTCRADYCCC
GGGRHTYGAACCCRSGHC		 ChIP-seq
Gerstein et al.(2012)
HepG2_HSF1_Stanford 		0.337 0.563
HSF1
M09230_2.00 		Homo sapiens
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN		 Misc
Kulakovskiy et al.(2013)
HSF1_HUMAN.H11MO.0.A 		0.337 0.563
Hsf1
M09232_2.00 		Mus musculus
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN		 Misc
Kulakovskiy et al.(2013)
HSF1_MOUSE.H11MO.0.A 		0.337 0.563
HSF1
M09592_2.00 		Homo sapiens
NNBBCYRGAANNTTCYRGVV
BBCYRGAANNTTCYRGVVNN		 Misc
Heinz et al.(2010)
HepG2-HSF1_GSE31477 		0.337 0.563
Hsf1
M09593_2.00 		Mus musculus
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN		 Misc
Heinz et al.(2010)
Striatum-HSF1_GSE38000 		0.337 0.563
HSF1
M10863_2.00 		Homo sapiens
NGAAHNTTCY
RGAANDTTCN		 Transfac
Matys et al.(2006)
V$HSF1_01 		0.337 0.563
HSF1
M10864_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q5_01 		0.337 0.563
HSF1
M10865_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q5 		0.337 0.563
HSF1
M10866_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q6_01 		0.337 0.563
HSF1
M10867_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q6 		0.337 0.563
HSF1
M10868_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF_Q6 		0.337 0.563
HSF1
M05524_2.00 		Homo sapiens
RGAANRTTCYRGAWN
NWTCYRGAAYNTTCY		 SELEX
Yin et al.(2017)
HSF1_eDBD_Methyl-HT-SELEX 		0.337 0.563
HSF1
M05526_2.00 		Homo sapiens
RGAANVTTCYRGAWN
NWTCYRGAABNTTCY		 SELEX
Yin et al.(2017)
HSF1_FL_Methyl-HT-SELEX 		0.337 0.563
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10014994 HSF 29 119

Links

Other HSF family TFs
Other Linum usitatissimum TFs

1457 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30169.m006340 Ricinus communis 30169.m006340 I
AC214648.3_FG005 Zea mays AC214648.3_FG005 I
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I
Bo3g040220 Brassica oleracea Bo3g040220 N
Bo5g008590 Brassica oleracea Bo5g008590 N
Bra018675 Brassica rapa Bra018675 N
Bra031599 Brassica rapa Bra031599 N
Bra035698 Brassica rapa Bra035698 N
Carubv10010390m.g Capsella rubella Carubv10010390m.g N
cassava11218.m1 Manihot esculenta cassava11218.m1 I
cassava16668.m1 Manihot esculenta cassava16668.m1 N
cassava27818.m1 Manihot esculenta cassava27818.m1 I
cassava40961.m1 Manihot esculenta cassava40961.m1 I
cassava44959.m1 Manihot esculenta cassava44959.m1 N
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I
Ca_02507 Cicer arietinum Ca_02507 N
Ca_04287 Cicer arietinum Ca_04287 I
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N
Cla000556 Citrullus lanatus Cla000556 I
Cla005133 Citrullus lanatus Cla005133 N
Cla013678 Citrullus lanatus Cla013678 I
Cucsa.052720 Cucumis sativus Cucsa.052720 I
Cucsa.118370 Cucumis sativus Cucsa.118370 I
Cucsa.166030 Cucumis sativus Cucsa.166030 N
Cucsa.207400 Cucumis sativus Cucsa.207400 N
F775_02335 Aegilops tauschii F775_02335 N
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N
GLYMA11G15810 Glycine max GLYMA11G15810 N
GLYMA12G07650 Glycine max GLYMA12G07650 I
GLYMA15G05030 Glycine max GLYMA15G05030 I
GLYMA20G02850 Glycine max GLYMA20G02850 I
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N
LBD11 Arabidopsis thaliana AT2G28500 N
LBD3 Vitis vinifera VIT_19s0027g01120 I
Lus10011645.g Linum usitatissimum Lus10011645.g I
Lus10036130.g Linum usitatissimum Lus10036130.g I
Lus10040373.g Linum usitatissimum Lus10040373.g I
MDP0000121203 Malus domestica MDP0000121203 I
MDP0000123013 Malus domestica MDP0000123013 I
MDP0000151784 Malus domestica MDP0000151784 I
MDP0000268890 Malus domestica MDP0000268890 I
MDP0000284409 Malus domestica MDP0000284409 I
MDP0000822986 Malus domestica MDP0000822986 I
MDP0000879799 Malus domestica MDP0000879799 N
mgf015666m Mimulus guttatus mgf015666m N
mgf026046m Mimulus guttatus mgf026046m I
MTR_1g095850 Medicago truncatula MTR_1g095850 I
MTR_4g060950 Medicago truncatula MTR_4g060950 I
OB03G23270 Oryza brachyantha OB03G23270 N
OB05G11740 Oryza brachyantha OB05G11740 I
OBART05G01640 Oryza barthii OBART05G01640 N
OPUNC05G01610 Oryza punctata OPUNC05G01610 N
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I
PK11564.1 Cannabis sativa PK11564.1 I
Pm011040 Prunus mume Pm011040 I
Pm018585 Prunus mume Pm018585 I
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I
Sb09g002190 Sorghum bicolor Sb09g002190 I
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I
TCM_043081 Theobroma cacao TCM_043081 I
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N