CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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IRF4
(
Ochotona princeps
)
IRF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00605 (IRF)
IPR001346
ENSOPRG00000012683
T244288_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
IRF4
M03334_2.00
Homo sapiens
HCGAAACCGAAACYW
WRGTTTCGGTTTCGD
SELEX
Jolma et al.(2013)
IRF4_1
1.000
1.000
IRF4
M05539_2.00
Homo sapiens
NYGAAACYGAAACYN
NRGTTTCRGTTTCRN
SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX
1.000
1.000
IRF4
M07978_2.00
Homo sapiens
DNDVNNGWWVTGAVWVWN
NWBWBTCABWWCNNBHNH
ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha
1.000
1.000
IRF4
M09235_2.00
Homo sapiens
NDWDRRGGAASTGARAVH
DBTYTCASTTCCYYHWHN
Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A
1.000
1.000
IRF4
M09595_2.00
Homo sapiens
HNYGAAASYD
HRSTTTCRND
Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465
1.000
1.000
IRF4
M10885_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_07
1.000
1.000
IRF4
M10886_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_08
1.000
1.000
IRF4
M10887_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_Q5_01
1.000
1.000
IRF4
M10888_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_Q5
1.000
1.000
IRF4
M10889_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_Q6
1.000
1.000
IRF4
M05540_2.00
Homo sapiens
NYGAAASYGAWASHN
NDSTWTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX
1.000
1.000
Irf4
M00175_2.00
Mus musculus
NNNYGAWASN
NSTWTCRNNN
PBM
Badis et al.(2009)
Irf4_3476
0.990
0.990
Irf4
M09243_2.00
Mus musculus
NDAWVVRGAASTGARAVH
DBTYTCASTTCYBBWTHN
Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A
0.990
0.990
IRF8
M03335_2.00
Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD
SELEX
Jolma et al.(2013)
IRF8_1
0.810
0.810
IRF8
M03336_2.00
Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD
SELEX
Jolma et al.(2013)
IRF8_2
0.810
0.810
IRF8
M05541_2.00
Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX
0.810
0.810
IRF8
M05543_2.00
Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN
SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX
0.810
0.810
IRF8
M09236_2.00
Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN
Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B
0.810
0.810
IRF8
M10890_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ICSBP_Q6
0.810
0.810
IRF8
M10891_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF8_Q6
0.810
0.810
IRF8
M05542_2.00
Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX
0.810
0.810
IRF8
M05544_2.00
Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX
0.810
0.810
Irf8
M09246_2.00
Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN
Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A
0.790
0.790
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000011579
IRF
23
128
KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIV
Links
Other
IRF
family TFs
Other
Ochotona princeps
TFs
156 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28179.m000457
Ricinus communis
28179.m000457
N
29596.m000688
Ricinus communis
29596.m000688
N
Aquca_010_00033
Aquilegia coerulea
Aquca_010_00033
N
BGIOSGA011499
Oryza indica
BGIOSGA011499
N
BGIOSGA023624
Oryza indica
BGIOSGA023624
N
BGIOSGA031474
Oryza indica
BGIOSGA031474
N
bHLH093
Arabidopsis lyrata
fgenesh2_kg.8__2611__AT5G65640.1
N
BHLH61
Arabidopsis thaliana
AT5G10570
N
BHLH93
Arabidopsis thaliana
AT5G65640
N
Bo2g168250
Brassica oleracea
Bo2g168250
N
Bo3g097890
Brassica oleracea
Bo3g097890
N
Bo9g171940
Brassica oleracea
Bo9g171940
N
Bostr.0568s0223
Boechera stricta
Bostr.0568s0223
N
Bostr.13175s0042
Boechera stricta
Bostr.13175s0042
N
Bra024404
Brassica rapa
Bra024404
N
Bra031852
Brassica rapa
Bra031852
N
BRADI1G30000
Brachypodium distachyon
BRADI1G30000
N
BRADI1G76030
Brachypodium distachyon
BRADI1G76030
N
Cagra.0917s0023
Capsella grandiflora
Cagra.0917s0023
N
Cagra.1085s0002
Capsella grandiflora
Cagra.1085s0002
N
Carubv10001486m.g
Capsella rubella
Carubv10001486m.g
N
Carubv10026606m.g
Capsella rubella
Carubv10026606m.g
N
cassava1707.valid.m1
Manihot esculenta
cassava1707.valid.m1
N
cassava20174.m1
Manihot esculenta
cassava20174.m1
N
cassava35909.valid.m1
Manihot esculenta
cassava35909.valid.m1
N
cassava42105.valid.m1
Manihot esculenta
cassava42105.valid.m1
N
Ca_04981
Cicer arietinum
Ca_04981
N
Ca_11531
Cicer arietinum
Ca_11531
N
chr2.CM0177.460.nc
Lotus japonicus
chr2.CM0177.460.nc
N
chr2.CM0504.20.nd
Lotus japonicus
chr2.CM0504.20.nd
N
Ciclev10001683m.g
Citrus clementina
Ciclev10001683m.g
N
Ciclev10025967m.g
Citrus clementina
Ciclev10025967m.g
N
Cla014300
Citrullus lanatus
Cla014300
N
Cla022518
Citrullus lanatus
Cla022518
N
Cla023435
Citrullus lanatus
Cla023435
N
Cucsa.103760
Cucumis sativus
Cucsa.103760
N
Cucsa.160860
Cucumis sativus
Cucsa.160860
N
Cucsa.312190
Cucumis sativus
Cucsa.312190
N
Eucgr.F00459
Eucalyptus grandis
Eucgr.F00459
N
Eucgr.F02171
Eucalyptus grandis
Eucgr.F02171
N
Eucgr.I00608
Eucalyptus grandis
Eucgr.I00608
N
evm.TU.supercontig_129.19
Carica papaya
evm.TU.supercontig_129.19
N
evm.TU.supercontig_177.1
Carica papaya
evm.TU.supercontig_177.1
N
F775_00539
Aegilops tauschii
F775_00539
N
fgenesh2_kg.6__1024__AT5G10570.1
Arabidopsis lyrata
fgenesh2_kg.6__1024__AT5G10570.1
N
gene05560-v1.0-hybrid
Fragaria vesca
gene05560-v1.0-hybrid
N
gene26895-v1.0-hybrid
Fragaria vesca
gene26895-v1.0-hybrid
N
GLYMA01G02390
Glycine max
GLYMA01G02390
N
GLYMA02G38240
Glycine max
GLYMA02G38240
N
GLYMA04G09580
Glycine max
GLYMA04G09580
N
GLYMA06G09670
Glycine max
GLYMA06G09670
N
GLYMA08G37240
Glycine max
GLYMA08G37240
N
GLYMA09G33590
Glycine max
GLYMA09G33590
N
GLYMA14G36370
Glycine max
GLYMA14G36370
N
Gorai.002G137900
Gossypium raimondii
Gorai.002G137900
N
Gorai.003G035900
Gossypium raimondii
Gorai.003G035900
N
Gorai.007G229900
Gossypium raimondii
Gorai.007G229900
N
Gorai.009G226200
Gossypium raimondii
Gorai.009G226200
N
Gorai.010G031800
Gossypium raimondii
Gorai.010G031800
N
GRMZM2G128807
Zea mays
GRMZM2G128807
N
GRMZM2G173372
Zea mays
GRMZM2G173372
N
GRMZM2G435015
Zea mays
GRMZM2G435015
N
GSMUA_Achr1G26300_001
Musa acuminata
GSMUA_Achr1G26300_001
N
GSMUA_Achr7G03930_001
Musa acuminata
GSMUA_Achr7G03930_001
N
GSMUA_Achr8G34120_001
Musa acuminata
GSMUA_Achr8G34120_001
N
GSMUA_AchrUn_randomG16890_001
Musa acuminata
GSMUA_AchrUn_randomG16890_001
N
LjSGA_043777.1
Lotus japonicus
LjSGA_043777.1
N
LPERR03G02580
Leersia perrieri
LPERR03G02580
N
LPERR06G23280
Leersia perrieri
LPERR06G23280
N
Lus10002160.g
Linum usitatissimum
Lus10002160.g
N
Lus10039631.g
Linum usitatissimum
Lus10039631.g
N
MDP0000175282
Malus domestica
MDP0000175282
N
MDP0000178782
Malus domestica
MDP0000178782
N
MDP0000312274
Malus domestica
MDP0000312274
N
MDP0000603926
Malus domestica
MDP0000603926
N
MDP0000644807
Malus domestica
MDP0000644807
N
mgf011848m
Mimulus guttatus
mgf011848m
N
mgf017272m
Mimulus guttatus
mgf017272m
N
MLOC_55768
Hordeum vulgare
MLOC_55768
N
MTR_3g111290
Medicago truncatula
MTR_3g111290
N
MTR_5g030770
Medicago truncatula
MTR_5g030770
N
OBART03G02840
Oryza barthii
OBART03G02840
N
OBART06G27800
Oryza barthii
OBART06G27800
N
OBART06G27860
Oryza barthii
OBART06G27860
N
OBART10G17440
Oryza barthii
OBART10G17440
N
OGLUM03G02750
Oryza glumaepatula
OGLUM03G02750
N
OGLUM06G29220
Oryza glumaepatula
OGLUM06G29220
N
OGLUM10G17470
Oryza glumaepatula
OGLUM10G17470
N
OLONG_005983
Oryza longistaminata
OLONG_005983
N
OMERI03G02800
Oryza meridionalis
OMERI03G02800
N
OMERI06G27810
Oryza meridionalis
OMERI06G27810
N
OMERI10G13920
Oryza meridionalis
OMERI10G13920
N
ONIVA03G02430
Oryza nivara
ONIVA03G02430
N
ONIVA06G30800
Oryza nivara
ONIVA06G30800
N
ONIVA10G19680
Oryza nivara
ONIVA10G19680
N
OPUNC03G02570
Oryza punctata
OPUNC03G02570
N
OPUNC06G25390
Oryza punctata
OPUNC06G25390
N
OPUNC10G15730
Oryza punctata
OPUNC10G15730
N
orange1.1g018897m.g
Citrus sinensis
orange1.1g018897m.g
N
orange1.1g038389m.g
Citrus sinensis
orange1.1g038389m.g
N
ORGLA03G0026100
Oryza glaberrima
ORGLA03G0026100
N
ORGLA10G0124500
Oryza glaberrima
ORGLA10G0124500
N
ORUFI03G02540
Oryza rufipogon
ORUFI03G02540
N
ORUFI06G29810
Oryza rufipogon
ORUFI06G29810
N
ORUFI10G18500
Oryza rufipogon
ORUFI10G18500
N
OS03G0135700
Oryza sativa
OS03G0135700
N
OS10G0544200
Oryza sativa
OS10G0544200
N
Pavir.Ia04450
Panicum virgatum
Pavir.Ia04450
N
Pavir.Ib00206
Panicum virgatum
Pavir.Ib00206
N
Pavir.J18000
Panicum virgatum
Pavir.J18000
N
Pavir.J18595
Panicum virgatum
Pavir.J18595
N
Pavir.J25463
Panicum virgatum
Pavir.J25463
N
PDK_20s1771821g001
Phoenix dactylifera
PDK_20s1771821g001
N
PGSC0003DMG400002056
Solanum tuberosum
PGSC0003DMG400002056
N
PGSC0003DMG400006394
Solanum tuberosum
PGSC0003DMG400006394
N
PGSC0003DMG400010388
Solanum tuberosum
PGSC0003DMG400010388
N
PGSC0003DMG400030616
Solanum tuberosum
PGSC0003DMG400030616
N
PK12634.1
Cannabis sativa
PK12634.1
N
Pm002283
Prunus mume
Pm002283
N
Pm004330
Prunus mume
Pm004330
N
POPTR_0002s10910
Populus trichocarpa
POPTR_0002s10910
N
PRUPE_ppa007656mg
Prunus persica
PRUPE_ppa007656mg
N
PRUPE_ppa016514mg
Prunus persica
PRUPE_ppa016514mg
N
SapurV1A.0004s0900
Salix purpurea
SapurV1A.0004s0900
N
Sb01g047940
Sorghum bicolor
Sb01g047940
N
Sb10g030470
Sorghum bicolor
Sb10g030470
N
SELMODRAFT_77288
Selaginella moellendorffii
SELMODRAFT_77288
N
Si006877m.g
Setaria italica
Si006877m.g
N
Si036470m.g
Setaria italica
Si036470m.g
N
Solyc02g063430.2
Solanum lycopersicum
Solyc02g063430.2
N
Solyc02g091690.2
Solanum lycopersicum
Solyc02g091690.2
N
Solyc12g088130.1
Solanum lycopersicum
Solyc12g088130.1
N
TCM_000915
Theobroma cacao
TCM_000915
N
TCM_034574
Theobroma cacao
TCM_034574
N
Thhalv10004732m.g
Eutrema salsugineum
Thhalv10004732m.g
N
Traes_3AS_1FD49785C
Triticum aestivum
Traes_3AS_1FD49785C
N
Traes_4BL_0F2281616
Triticum aestivum
Traes_4BL_0F2281616
N
Traes_4DL_0075CCAD9
Triticum aestivum
Traes_4DL_0075CCAD9
N
Traes_4DL_1C0F38900
Triticum aestivum
Traes_4DL_1C0F38900
N
Traes_4DL_5851FBD0C
Triticum aestivum
Traes_4DL_5851FBD0C
N
Traes_4DL_ACF3BE9C5
Triticum aestivum
Traes_4DL_ACF3BE9C5
N
Traes_7DL_67FF12B6A
Triticum aestivum
Traes_7DL_67FF12B6A
N
TRIUR3_23651
Triticum urartu
TRIUR3_23651
N
TRIUR3_29035
Triticum urartu
TRIUR3_29035
N
VIT_00s1312g00010
Vitis vinifera
VIT_00s1312g00010
N
VIT_17s0000g03550
Vitis vinifera
VIT_17s0000g03550
N
VIT_18s0001g08040
Vitis vinifera
VIT_18s0001g08040
N