IRF6 (Sus scrofa)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSSSCG00000015612 T244389_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		1.000 1.000
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		1.000 1.000
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		1.000 1.000
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		1.000 1.000
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		1.000 1.000
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.943 0.943
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.940 0.940
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.916 0.916
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.790 0.790
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.723 0.723
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.723 0.723
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.723 0.723
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.723 0.723
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.723 0.723
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.723 0.723
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.723 0.723
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.723 0.723
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000016552 IRF 9 114
ENSSSCP00000029888 IRF 9 92

Links

Other IRF family TFs
Other Sus scrofa TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG004656.1 Alligator sinensis Alligator_sinensis_CCG004656.1 I
Cmyd_10000422 Chelonia mydas Cmyd_10000422 I
ENSAMEG00000000235 Ailuropoda melanoleuca ENSAMEG00000000235 I
ENSAMXG00000009564 Astyanax mexicanus ENSAMXG00000009564 I
ENSCSAG00000004521 Chlorocebus sabaeus ENSCSAG00000004521 I
ENSGMOG00000009783 Gadus morhua ENSGMOG00000009783 I
ENSGMOG00000013274 Gadus morhua ENSGMOG00000013274 I
ENSLACG00000003269 Latimeria chalumnae ENSLACG00000003269 I
ENSLOCG00000005321 Lepisosteus oculatus ENSLOCG00000005321 I
ENSMLUG00000028063 Myotis lucifugus ENSMLUG00000028063 I
ENSMPUG00000007099 Mustela putorius furo ENSMPUG00000007099 I
ENSNLEG00000011114 Nomascus leucogenys ENSNLEG00000011114 I
ENSOARG00000004745 Ovis aries ENSOARG00000004745 I
ENSONIG00000013775 Oreochromis niloticus ENSONIG00000013775 N
ENSONIG00000016360 Oreochromis niloticus ENSONIG00000016360 I
ENSP00000222305-D1 Bos grunniens ENSP00000222305-D1 I
ENSPANG00000011040 Papio anubis ENSPANG00000011040 I
ENSPFOG00000005160 Poecilia formosa ENSPFOG00000005160 I
ENSPFOG00000017027 Poecilia formosa ENSPFOG00000017027 I
ENSPPYG00000009855 Pongo abelii ENSPPYG00000009855 I
ENSPSIG00000008600 Pelodiscus sinensis ENSPSIG00000008600 I
ENSSTOG00000022219 Ictidomys tridecemlineatus ENSSTOG00000022219 I
ENSXMAG00000005137 Xiphophorus maculatus ENSXMAG00000005137 I
ENSXMAG00000006484 Xiphophorus maculatus ENSXMAG00000006484 I
Myotis_brandtii_Usf2_10035177 Myotis brandtii Myotis_brandtii_Usf2_10035177 I
Ogr06118 Ophisaurus gracilis Ogr06118 I
Pvit_11612 Pogona vitticeps Pvit_11612 I
usf1 Danio rerio ENSDARG00000041689 N
usf1 Tetraodon nigroviridis ENSTNIG00000014361 I
usf1 Oryzias latipes ENSORLG00000015402 I
usf1 Gasterosteus aculeatus ENSGACG00000005115 I
usf1 Takifugu rubripes ENSTRUG00000005343 I
USF2 Takifugu rubripes ENSTRUG00000005182 I
USF2 Pan troglodytes ENSPTRG00000010836 I
USF2 Pteropus vampyrus ENSPVAG00000004161 I
Usf2 Rattus norvegicus ENSRNOG00000053725 I
USF2 Sus scrofa ENSSSCG00000002885 I
USF2 Oryctolagus cuniculus ENSOCUG00000026259 I
USF2 Oryzias latipes ENSORLG00000015114 I
USF2 Bos taurus ENSBTAG00000017035 I
USF2 Canis familiaris ENSCAFG00000007054 I
USF2 Callithrix jacchus ENSCJAG00000010451 I
USF2 Cavia porcellus ENSCPOG00000012147 I
usf2 Danio rerio ENSDARG00000020228 I
USF2 Dasypus novemcinctus ENSDNOG00000003072 I
USF2 Equus caballus ENSECAG00000008583 I
USF2 Felis catus ENSFCAG00000008894 I
USF2 Homo sapiens ENSG00000105698 D
usf2 Gasterosteus aculeatus ENSGACG00000002481 N
USF2 Gasterosteus aculeatus ENSGACG00000012475 I
USF2 Loxodonta africana ENSLAFG00000029360 I
USF2 Microcebus murinus ENSMICG00000001519 I
USF2 Macaca mulatta ENSMMUG00000011291 I
USF2 Monodelphis domestica ENSMODG00000013843 I
Usf2 Mus musculus ENSMUSG00000058239 D
USF2 Anolis carolinensis ENSACAG00000010293 I
USF2 Otolemur garnettii ENSOGAG00000001476 I
USF2 Procavia capensis ENSPCAG00000013941 I
usf2.L Xenopus laevis XB-GENE-991248 I
usf2.S Xenopus laevis XB-GENE-6253011 I