Cucsa.196600 (Cucumis sativus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cucsa.196600 T246512_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.970 0.970
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.768 0.768
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.196600.1 LOB 10 108

Links

Other LOB family TFs
Other Cucumis sativus TFs

325 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
D917_01243 Trichinella nativa D917_01243 N 0.000
D917_08464 Trichinella nativa D917_08464 N 0.000
EFA77534.1 Polysphondylium pallidum EFA77534.1 N 0.000
fgenesh1_pg.C_chr_1000979 Mycosphaerella graminicola fgenesh1_pg.C_chr_1000979 N 0.000
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.000
GPLIN_000847800 Globodera pallida GPLIN_000847800 N 0.000
LCUP018488 Lucilia cuprina LCUP018488 N 0.000
LEMA_P074670.1 Leptosphaeria maculans LEMA_P074670.1 I 0.000
MDP0000242568 Malus domestica MDP0000242568 I 0.000
MLOC_68913 Hordeum vulgare MLOC_68913 N 0.000
Mycgr3G89562 Zymoseptoria tritici Mycgr3G89562 N 0.000
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.000
SapurV1A.0237s0190 Salix purpurea SapurV1A.0237s0190 N 0.000
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N 0.000
TTAC_0000838901 Hydatigera taeniaeformis TTAC_0000838901 N 0.000
W97_04494 Coniosporium apollinis W97_04494 I 0.000