Bra037960 (Brassica rapa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bra037960 T248035_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL1
M02264_2.00 		Arabidopsis thaliana
NNDHCGDHNN
NNDHCGDHNN		 PBM
Weirauch et al.(2014)
pTH7464 		0.935 0.758
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra037960.1-P MADF 86 157

Links

Other MADF family TFs
Other Brassica rapa TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.823
ASIL1 Arabidopsis thaliana AT1G54060 D 0.935
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.951
Bo3g184450 Brassica oleracea Bo3g184450 I 0.967
Bo6g033010 Brassica oleracea Bo6g033010 I 0.967
Bo6g050870 Brassica oleracea Bo6g050870 I 0.949
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.866
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.951
Bra014370 Brassica rapa Bra014370 I 0.953
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.951
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.849
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.951
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.844
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.831
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.814
Cla015773 Citrullus lanatus Cla015773 I 0.816
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.816
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.853
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.814
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.814
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.816
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.816
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.825
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.814
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.831
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.821
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.955