Carubv10009310m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10009310m.g T250621_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL1
M02264_2.00 		Arabidopsis thaliana
NNDHCGDHNN
NNDHCGDHNN		 PBM
Weirauch et al.(2014)
pTH7464 		0.957 0.857
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.815 0.629
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009310m MADF 102 177

Links

Other MADF family TFs
Other Capsella rubella TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.971
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.968
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.968
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.960
Bo6g050870 Brassica oleracea Bo6g050870 I 0.959
Bra014370 Brassica rapa Bra014370 I 0.958
ASIL1 Arabidopsis thaliana AT1G54060 D 0.957
Bo3g184450 Brassica oleracea Bo3g184450 I 0.951
Bo6g033010 Brassica oleracea Bo6g033010 I 0.951
Bra037960 Brassica rapa Bra037960 I 0.951
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.890
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.890
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.883
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.879
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.850
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.846
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.844
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.844
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.843
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.843
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.839
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.834
PK22475.1 Cannabis sativa PK22475.1 N 0.830
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.829
TCM_029209 Theobroma cacao TCM_029209 I 0.829
29727.m000472 Ricinus communis 29727.m000472 I 0.829
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.829
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.829
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.829
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.828
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.828
Cla015773 Citrullus lanatus Cla015773 I 0.827
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.827
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.825
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.820
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.820
Pm013209 Prunus mume Pm013209 I 0.820
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.820
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.820
MDP0000255104 Malus domestica MDP0000255104 I 0.819
MDP0000281471 Malus domestica MDP0000281471 I 0.819
ASIL2 Arabidopsis thaliana AT3G14180 D 0.815
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.815
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.815
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.815
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.815
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.815