POPTR_0001s08350 (Populus trichocarpa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 POPTR_0001s08350 T249656_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.898 0.653
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.898 0.653
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s08350.1 MADF 39 119

Links

Other MADF family TFs
Other Populus trichocarpa TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g109710 Brassica oleracea Bo4g109710 I
Bo6g073290 Brassica oleracea Bo6g073290 I
Bostr.20903s0042 Boechera stricta Bostr.20903s0042 I
Bostr.20903s0043 Boechera stricta Bostr.20903s0043 I
Bra003305 Brassica rapa Bra003305 I
Cagra.0686s0010 Capsella grandiflora Cagra.0686s0010 I
Carubv10017540m.g Capsella rubella Carubv10017540m.g I
GSMUA_Achr4G03880_001 Musa acuminata GSMUA_Achr4G03880_001 I
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I
SPL15 Arabidopsis thaliana AT3G57920 D
SPL15 Arabidopsis lyrata fgenesh2_kg.5__2235__AT3G57920.1 I
Thhalv10006058m.g Eutrema salsugineum Thhalv10006058m.g I