Bostr.20903s0042 (Boechera stricta)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Bostr.20903s0042 T323385_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL15
M07263_2.00 		Arabidopsis thaliana
DNWNTGTACGGAHN
NDTCCGTACANWNH		 Dap-seq
OMalley et al.(2016)
SPL15_col_a 		0.985 0.973
SPL15
M07264_2.00 		Arabidopsis thaliana
DNTGTACGGAHNNNN
NNNNDTCCGTACANH		 Dap-seq
OMalley et al.(2016)
SPL15_colamp_a 		0.985 0.973
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.20903s0042.1.p SBP 54 128
Bostr.20903s0042.2.p SBP 2 38
Bostr.20903s0042.3.p SBP 2 38

Links

Other SBP family TFs
Other Boechera stricta TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.20903s0043 Boechera stricta Bostr.20903s0043 I 0.986
Cagra.0686s0010 Capsella grandiflora Cagra.0686s0010 I 0.986
Carubv10017540m.g Capsella rubella Carubv10017540m.g I 0.986
SPL15 Arabidopsis thaliana AT3G57920 D 0.985
Bo4g109710 Brassica oleracea Bo4g109710 I 0.985
Bo6g073290 Brassica oleracea Bo6g073290 I 0.985
SPL15 Arabidopsis lyrata fgenesh2_kg.5__2235__AT3G57920.1 I 0.985
Bra003305 Brassica rapa Bra003305 I 0.981
Bra014599 Brassica rapa Bra014599 I 0.974
Thhalv10006058m.g Eutrema salsugineum Thhalv10006058m.g I 0.967
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I 0.928
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I 0.928
GSMUA_Achr4G03880_001 Musa acuminata GSMUA_Achr4G03880_001 I 0.920
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I 0.918
Thhalv10016816m.g Eutrema salsugineum Thhalv10016816m.g I 0.893