Bra014599 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra014599 T322463_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL15
M07263_2.00 		Arabidopsis thaliana
DNWNTGTACGGAHN
NDTCCGTACANWNH		 Dap-seq
OMalley et al.(2016)
SPL15_col_a 		0.972 0.912
SPL15
M07264_2.00 		Arabidopsis thaliana
DNTGTACGGAHNNNN
NNNNDTCCGTACANH		 Dap-seq
OMalley et al.(2016)
SPL15_colamp_a 		0.972 0.912
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra014599.1-P SBP 60 127

Links

Other SBP family TFs
Other Brassica rapa TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g109710 Brassica oleracea Bo4g109710 I 0.974
Bo6g073290 Brassica oleracea Bo6g073290 I 0.974
Bra003305 Brassica rapa Bra003305 I 0.974
Bostr.20903s0042 Boechera stricta Bostr.20903s0042 I 0.974
Bostr.20903s0043 Boechera stricta Bostr.20903s0043 I 0.974
Cagra.0686s0010 Capsella grandiflora Cagra.0686s0010 I 0.974
Carubv10017540m.g Capsella rubella Carubv10017540m.g I 0.974
SPL15 Arabidopsis thaliana AT3G57920 D 0.972
SPL15 Arabidopsis lyrata fgenesh2_kg.5__2235__AT3G57920.1 I 0.972
Thhalv10006058m.g Eutrema salsugineum Thhalv10006058m.g I 0.945
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I 0.904
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I 0.904
GSMUA_Achr4G03880_001 Musa acuminata GSMUA_Achr4G03880_001 I 0.894
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I 0.891