Thhalv10006058m.g (Eutrema salsugineum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Thhalv10006058m.g T323681_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL15
M07263_2.00 		Arabidopsis thaliana
DNWNTGTACGGAHN
NDTCCGTACANWNH		 Dap-seq
OMalley et al.(2016)
SPL15_col_a 		0.966 0.947
SPL15
M07264_2.00 		Arabidopsis thaliana
DNTGTACGGAHNNNN
NNNNDTCCGTACANH		 Dap-seq
OMalley et al.(2016)
SPL15_colamp_a 		0.966 0.947
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10006058m SBP 64 138

Links

Other SBP family TFs
Other Eutrema salsugineum TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.20903s0043 Boechera stricta Bostr.20903s0043 I 0.967
Carubv10017540m.g Capsella rubella Carubv10017540m.g I 0.967
Cagra.0686s0010 Capsella grandiflora Cagra.0686s0010 I 0.967
Bostr.20903s0042 Boechera stricta Bostr.20903s0042 I 0.967
Bo4g109710 Brassica oleracea Bo4g109710 I 0.967
Bo6g073290 Brassica oleracea Bo6g073290 I 0.967
SPL15 Arabidopsis thaliana AT3G57920 D 0.966
SPL15 Arabidopsis lyrata fgenesh2_kg.5__2235__AT3G57920.1 I 0.966
Bra003305 Brassica rapa Bra003305 I 0.958
Bra014599 Brassica rapa Bra014599 I 0.945
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I 0.941
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I 0.941
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I 0.935
GSMUA_Achr4G03880_001 Musa acuminata GSMUA_Achr4G03880_001 I 0.935
mgf012995m Mimulus guttatus mgf012995m I 0.891