Carubv10017540m.g (Capsella rubella)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Carubv10017540m.g T323419_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL15
M07263_2.00 		Arabidopsis thaliana
DNWNTGTACGGAHN
NDTCCGTACANWNH		 Dap-seq
OMalley et al.(2016)
SPL15_col_a 		0.985 0.960
SPL15
M07264_2.00 		Arabidopsis thaliana
DNTGTACGGAHNNNN
NNNNDTCCGTACANH		 Dap-seq
OMalley et al.(2016)
SPL15_colamp_a 		0.985 0.960
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017540m SBP 61 135

Links

Other SBP family TFs
Other Capsella rubella TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.20903s0042 Boechera stricta Bostr.20903s0042 I 0.986
Bostr.20903s0043 Boechera stricta Bostr.20903s0043 I 0.986
Cagra.0686s0010 Capsella grandiflora Cagra.0686s0010 I 0.986
SPL15 Arabidopsis thaliana AT3G57920 D 0.985
Bo4g109710 Brassica oleracea Bo4g109710 I 0.985
Bo6g073290 Brassica oleracea Bo6g073290 I 0.985
SPL15 Arabidopsis lyrata fgenesh2_kg.5__2235__AT3G57920.1 I 0.985
Bra003305 Brassica rapa Bra003305 I 0.981
Bra014599 Brassica rapa Bra014599 I 0.974
Thhalv10006058m.g Eutrema salsugineum Thhalv10006058m.g I 0.967
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I 0.928
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I 0.928
GSMUA_Achr4G03880_001 Musa acuminata GSMUA_Achr4G03880_001 I 0.920
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I 0.918
Thhalv10016816m.g Eutrema salsugineum Thhalv10016816m.g I 0.893