Ciclev10016016m.g (Citrus clementina)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Ciclev10016016m.g T250644_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.877 0.653
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.877 0.653
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10016016m MADF 45 125

Links

Other MADF family TFs
Other Citrus clementina TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004641 Ricinus communis 29929.m004641 I 0.000
Bo3g141480 Brassica oleracea Bo3g141480 I 0.000
Bo5g051970 Brassica oleracea Bo5g051970 I 0.000
Bo5g051980 Brassica oleracea Bo5g051980 I 0.000
Bo7g049940 Brassica oleracea Bo7g049940 I 0.000
Bo7g049950 Brassica oleracea Bo7g049950 I 0.000
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.000
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.000
Bra010949 Brassica rapa Bra010949 I 0.000
Bra030040 Brassica rapa Bra030040 I 0.000
Bra030041 Brassica rapa Bra030041 I 0.000
Bra032822 Brassica rapa Bra032822 I 0.000
Bra032823 Brassica rapa Bra032823 I 0.000
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.000
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.000
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.000
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.000
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.000
Ca_08506 Cicer arietinum Ca_08506 I 0.000
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.000
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.000
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.000
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.000
mgf019346m Mimulus guttatus mgf019346m I 0.000
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.000
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.000
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.000
SapurV1A.0001s2320 Salix purpurea SapurV1A.0001s2320 N 0.000
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.000
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.000
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.000
SPL10 Arabidopsis thaliana AT1G27370 D 0.000
SPL11 Arabidopsis thaliana AT1G27360 D 0.000
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.000
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.000
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.000
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.000