CpipJ_CPIJ000253 (Culex pipiens)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 CpipJ_CPIJ000253 T252702_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Mef2
M08214_2.00 		Drosophila melanogaster
YTAWWWWTAR
YTAWWWWTAR		 ChIP-seq
Contrino et al.(2012)
Mf26 		1.000 1.000
MEF2A
M03340_2.00 		Homo sapiens
KCTAWAAATAGM
KCTATTTWTAGM		 SELEX
Jolma et al.(2013)
MEF2A_1 		0.896 0.896
MEF2D
M03343_2.00 		Homo sapiens
DCTAWAAATAGM
KCTATTTWTAGH		 SELEX
Jolma et al.(2013)
MEF2D_1 		0.896 0.896
MEF2D
M05555_2.00 		Homo sapiens
CYWWATWWGG
CCWWATWWRG		 SELEX
Yin et al.(2017)
MEF2D_eDBD_HT-SELEX 		0.896 0.896
MEF2A
M07979_2.00 		Homo sapiens
NDDHYAAAAATARHH
DDYTATTTTTRDHHN		 ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2A_HudsonAlpha 		0.896 0.896
MEF2A
M08212_2.00 		Homo sapiens
CTAWWWWTAG
CTAWWWWTAG		 ChIP-seq
Contrino et al.(2012)
Mv88 		0.896 0.896
MEF2A
M08213_2.00 		Homo sapiens
AAAATAGM
KCTATTTT		 ChIP-seq
Contrino et al.(2012)
Mv90 		0.896 0.896
MEF2A
M09247_2.00 		Homo sapiens
DYYAAAAATAGMH
DKCTATTTTTRRH		 Misc
Kulakovskiy et al.(2013)
MEF2A_HUMAN.H11MO.0.A 		0.896 0.896
MEF2D
M09250_2.00 		Homo sapiens
CTAWAAATAGMH
DKCTATTTWTAG		 Misc
Kulakovskiy et al.(2013)
MEF2D_HUMAN.H11MO.0.A 		0.896 0.896
Mef2a
M09255_2.00 		Mus musculus
DDCYAWAAATARMH
DKYTATTTWTRGHH		 Misc
Kulakovskiy et al.(2013)
MEF2A_MOUSE.H11MO.0.A 		0.896 0.896
Mef2d
M09252_2.00 		Mus musculus
DDCTAWAAATAGMH
DKCTATTTWTAGHH		 Misc
Kulakovskiy et al.(2013)
MEF2D_MOUSE.H11MO.0.A 		0.896 0.896
Mef2a
M09599_2.00 		Mus musculus
CYNDAAATAG
CTATTTHNRG		 Misc
Heinz et al.(2010)
HL1-Mef2a.biotin_GSE21529 		0.896 0.896
MEF2A
M10933_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AMEF2_Q6 		0.896 0.896
MEF2A
M10934_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMEF2_Q6 		0.896 0.896
MEF2A
M10935_2.00 		Homo sapiens
BTCTAAAAATAACYCY
RGRGTTATTTTTAGAV		 Transfac
Matys et al.(2006)
V$MEF2_01 		0.896 0.896
MEF2A
M10936_2.00 		Homo sapiens
BNNNDDDCTAWAAATAGMHNNN
NNNDKCTATTTWTAGHHHNNNV		 Transfac
Matys et al.(2006)
V$MEF2_02 		0.896 0.896
MEF2A
M10937_2.00 		Homo sapiens
NNNNDWKCTAWAAATAGMHHNN
NNDDKCTATTTWTAGMWHNNNN		 Transfac
Matys et al.(2006)
V$MEF2_03 		0.896 0.896
MEF2A
M10938_2.00 		Homo sapiens
NVTGTTRCTAWAAATAGAAHHN
NDDWTCTATTTWTAGYAACABN		 Transfac
Matys et al.(2006)
V$MEF2_04 		0.896 0.896
MEF2A
M10939_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2A_05 		0.896 0.896
MEF2A
M10940_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2A_Q6 		0.896 0.896
MEF2D
M10957_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2D_Q4 		0.896 0.896
MEF2A
M10941_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2_Q6_02 		0.896 0.896
MEF2A
M10942_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MMEF2_Q6 		0.896 0.896
MEF2A
M10943_2.00 		Homo sapiens
NDKCTAWAAATAGMHH
DDKCTATTTWTAGMHN		 Transfac
Matys et al.(2006)
V$RSRFC4_01 		0.896 0.896
MEF2A
M10944_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RSRFC4_Q2 		0.896 0.896
MEF2D
M05556_2.00 		Homo sapiens
CYWWATWWGG
CCWWATWWRG		 SELEX
Yin et al.(2017)
MEF2D_eDBD_Methyl-HT-SELEX 		0.896 0.896
MEF2C
M02745_2.00 		Homo sapiens
TWCTAWAAATAG
CTATTTWTAGWA		 SELEX
Jolma et al.(2010)
MEF2C_dimer 		0.875 0.875
MEF2C
M05551_2.00 		Homo sapiens
CYWWATWWGG
CCWWATWWRG		 SELEX
Yin et al.(2017)
MEF2C_FL_HT-SELEX 		0.875 0.875
MEF2C
M08149_2.00 		Homo sapiens
NDDMYAAAAATAGMH
DKCTATTTTTRKHHN		 ChIP-seq
Mathelier et al.(2014)
MA0497.1 		0.875 0.875
MEF2C
M07980_2.00 		Homo sapiens
NDDYYAAAAATAGHH
DDCTATTTTTRRHHN		 ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2C_HudsonAlpha 		0.875 0.875
MEF2C
M09248_2.00 		Homo sapiens
DYYAAAAATARMH
DKYTATTTTTRRH		 Misc
Kulakovskiy et al.(2013)
MEF2C_HUMAN.H11MO.0.A 		0.875 0.875
Mef2c
M09253_2.00 		Mus musculus
DDMYAAAAATAGMHN
NDKCTATTTTTRKHH		 Misc
Kulakovskiy et al.(2013)
MEF2C_MOUSE.H11MO.0.A 		0.875 0.875
MEF2C
M09597_2.00 		Homo sapiens
DHYWDAAATARM
KYTATTTHWRDH		 Misc
Heinz et al.(2010)
GM12878-Mef2c_GSE32465 		0.875 0.875
MEF2C
M10945_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2C_02 		0.875 0.875
MEF2C
M10946_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2C_Q4 		0.875 0.875
MEF2C
M05552_2.00 		Homo sapiens
CYWWATWWGG
CCWWATWWRG		 SELEX
Yin et al.(2017)
MEF2C_FL_Methyl-HT-SELEX 		0.875 0.875
MEF2B
M03344_2.00 		Homo sapiens
RCTAWAAATAGM
KCTATTTWTAGY		 SELEX
Jolma et al.(2013)
MEF2B_1 		0.833 0.833
MEF2B
M05557_2.00 		Homo sapiens
CYNDWWWHGG
CCDWWWHNRG		 SELEX
Yin et al.(2017)
MEF2B_eDBD_HT-SELEX 		0.833 0.833
MEF2B
M05559_2.00 		Homo sapiens
CCVDWTATGGTAACA
TGTTACCATAWHBGG		 SELEX
Yin et al.(2017)
MEF2B_FL_HT-SELEX 		0.833 0.833
MEF2B
M09251_2.00 		Homo sapiens
CYWAAAATAGHHHH
DDDDCTATTTTWRG		 Misc
Kulakovskiy et al.(2013)
MEF2B_HUMAN.H11MO.0.A 		0.833 0.833
MEF2B
M05558_2.00 		Homo sapiens
CYWWWWWNGG
CCNWWWWWRG		 SELEX
Yin et al.(2017)
MEF2B_eDBD_Methyl-HT-SELEX 		0.833 0.833
MEF2B
M05560_2.00 		Homo sapiens
CCVDATATGGTAACR
YGTTACCATATHBGG		 SELEX
Yin et al.(2017)
MEF2B_FL_Methyl-HT-SELEX 		0.833 0.833
Mef2b
M10958_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEF2B_02 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ000253-RA MADS box 10 57

Links

Other MADS box family TFs
Other Culex pipiens TFs

484 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29726.m003959 Ricinus communis 29726.m003959 I
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I
Bo00629s160 Brassica oleracea Bo00629s160 I
Bo9g154530 Brassica oleracea Bo9g154530 I
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I
Bra002188 Brassica rapa Bra002188 I
Bra023695 Brassica rapa Bra023695 I
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I
Carubv10002913m.g Capsella rubella Carubv10002913m.g I
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I
Cla022022 Citrullus lanatus Cla022022 I
Cucsa.253690 Cucumis sativus Cucsa.253690 I
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I
F775_04392 Aegilops tauschii F775_04392 I
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I
GLYMA13G28460 Glycine max GLYMA13G28460 I
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I
GRMZM2G109354 Zea mays GRMZM2G109354 I
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I
LPERR05G12780 Leersia perrieri LPERR05G12780 I
Lus10012782.g Linum usitatissimum Lus10012782.g I
Lus10033993.g Linum usitatissimum Lus10033993.g I
MDP0000195461 Malus domestica MDP0000195461 I
MDP0000271587 Malus domestica MDP0000271587 I
mgf004695m Mimulus guttatus mgf004695m I
MTR_2g020620 Medicago truncatula MTR_2g020620 I
OB05G24080 Oryza brachyantha OB05G24080 I
OBART05G16150 Oryza barthii OBART05G16150 I
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I
OLONG_015968 Oryza longistaminata OLONG_015968 I
ONIVA05G16770 Oryza nivara ONIVA05G16770 I
OPUNC05G14270 Oryza punctata OPUNC05G14270 I
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I
Pavir.J00965 Panicum virgatum Pavir.J00965 I
Pavir.J03653 Panicum virgatum Pavir.J03653 I
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I
PK29723.1 Cannabis sativa PK29723.1 I
Pm008092 Prunus mume Pm008092 I
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I
Sb09g020110 Sorghum bicolor Sb09g020110 I
Si021754m.g Setaria italica Si021754m.g I
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I
SPL7 Vitis vinifera VIT_05s0020g02160 I
SPL7 Arabidopsis lyrata scaffold_601959.1 I
SPL7 Arabidopsis thaliana AT5G18830 D
SPL9 Oryza sativa OS05G0408200 I
TCM_021101 Theobroma cacao TCM_021101 I
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I