Bra025609 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra025609 T253322_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025609.1-P MADS box 19 65

Links

Other MADS box family TFs
Other Brassica rapa TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL105 Arabidopsis thaliana AT5G37415 I 0.808
AGL43 Arabidopsis thaliana AT5G40220 I 0.745
AGL75 Arabidopsis thaliana AT5G41200 I 0.745
AGL76 Arabidopsis thaliana AT5G40120 I 0.809
AGL77 Arabidopsis thaliana AT5G38740 I 0.809
AGL78 Arabidopsis thaliana AT5G65330 D 0.702
AGL81 Arabidopsis thaliana AT5G39750 I 0.809
AGL98 Arabidopsis thaliana AT5G39810 I 0.787
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I 0.809
Bo4g139260 Brassica oleracea Bo4g139260 I 0.766
Bo4g139560 Brassica oleracea Bo4g139560 N 0.851
Bo4g139620 Brassica oleracea Bo4g139620 N 0.872
Bo4g139640 Brassica oleracea Bo4g139640 N 0.851
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.766
Bostr.3751s0030 Boechera stricta Bostr.3751s0030 I 0.766
Bostr.3751s0031 Boechera stricta Bostr.3751s0031 I 0.723
Bostr.3751s0039 Boechera stricta Bostr.3751s0039 I 0.723
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I 0.745
Bra025607 Brassica rapa Bra025607 N 0.930
Bra025619 Brassica rapa Bra025619 N 0.894
Cagra.1681s0033 Capsella grandiflora Cagra.1681s0033 I 0.702
Carubv10015986m.g Capsella rubella Carubv10015986m.g I 0.702
fgenesh2_kg.7__3412__AT5G41200.1 Arabidopsis lyrata fgenesh2_kg.7__3412__AT5G41200.1 I 0.766
fgenesh2_kg.8__2584__AT5G65330.1 Arabidopsis lyrata fgenesh2_kg.8__2584__AT5G65330.1 I 0.702
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I 0.787
Thhalv10028184m.g Eutrema salsugineum Thhalv10028184m.g I 0.723
Thhalv10028282m.g Eutrema salsugineum Thhalv10028282m.g I 0.723