SRF (Cavia porcellus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ENSCPOG00000022327 T253608_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.963 0.963
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.963 0.963
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.963 0.963
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.963 0.963
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.963 0.963
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.963 0.963
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.963 0.963
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.963 0.963
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.963 0.963
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.963 0.963
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.963 0.963
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.963 0.963
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.963 0.963
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.963 0.963
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.963 0.963
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.963 0.963
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.963 0.963
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.963 0.963
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.963 0.963
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.963 0.963
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.963 0.963
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.963 0.963
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.963 0.963
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.926 0.926
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.926 0.926
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.852 0.852
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.815 0.815
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.815 0.815
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.815 0.815
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.815 0.815
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.815 0.815
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.815 0.815
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000015471 MADS box 16 42

Links

Other MADS box family TFs
Other Cavia porcellus TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28880.m000016 Ricinus communis 28880.m000016 I
AMTR_s00009p00107000 Amborella trichopoda AMTR_s00009p00107000 I
AMTR_s00012p00239180 Amborella trichopoda AMTR_s00012p00239180 I
Aquca_003_00096 Aquilegia coerulea Aquca_003_00096 I
Aquca_009_00956 Aquilegia coerulea Aquca_009_00956 I
ATTRP1 Arabidopsis lyrata fgenesh2_kg.8__1886__AT5G59430.4 I
BGIOSGA005358 Oryza indica BGIOSGA005358 I
BGIOSGA012326 Oryza indica BGIOSGA012326 I
Bo01118s020 Brassica oleracea Bo01118s020 I
Bo1g139150 Brassica oleracea Bo1g139150 I
Bo2g011570 Brassica oleracea Bo2g011570 I
Bo3g009370 Brassica oleracea Bo3g009370 I
Bo4g120560 Brassica oleracea Bo4g120560 I
Bo5g008270 Brassica oleracea Bo5g008270 I
Bo5g133380 Brassica oleracea Bo5g133380 I
Bo9g139390 Brassica oleracea Bo9g139390 I
Bo9g166400 Brassica oleracea Bo9g166400 I
Bostr.18473s0300 Boechera stricta Bostr.18473s0300 I
Bostr.25219s0206 Boechera stricta Bostr.25219s0206 I
Bostr.26833s0301 Boechera stricta Bostr.26833s0301 I
Bostr.2902s0116 Boechera stricta Bostr.2902s0116 I
Bostr.3640s0028 Boechera stricta Bostr.3640s0028 I
Bra002566 Brassica rapa Bra002566 I
Bra006218 Brassica rapa Bra006218 I
Bra008800 Brassica rapa Bra008800 I
Bra015585 Brassica rapa Bra015585 I
Bra023437 Brassica rapa Bra023437 I
Bra030689 Brassica rapa Bra030689 I
Bra034751 Brassica rapa Bra034751 I
Bra038729 Brassica rapa Bra038729 I
BRADI1G66677 Brachypodium distachyon BRADI1G66677 I
BRADI2G62170 Brachypodium distachyon BRADI2G62170 I
Cagra.0448s0008 Capsella grandiflora Cagra.0448s0008 I
Cagra.1317s0071 Capsella grandiflora Cagra.1317s0071 I
Cagra.1671s0374 Capsella grandiflora Cagra.1671s0374 I
Cagra.5588s0009 Capsella grandiflora Cagra.5588s0009 I
Cagra.5641s0019 Capsella grandiflora Cagra.5641s0019 I
Carubv10000426m.g Capsella rubella Carubv10000426m.g I
Carubv10011259m.g Capsella rubella Carubv10011259m.g I
Carubv10013179m.g Capsella rubella Carubv10013179m.g I
Carubv10016934m.g Capsella rubella Carubv10016934m.g I
Carubv10018629m.g Capsella rubella Carubv10018629m.g I
Carubv10026172m.g Capsella rubella Carubv10026172m.g I
cassava19451.valid.m1 Manihot esculenta cassava19451.valid.m1 I
cassava19452.valid.m1 Manihot esculenta cassava19452.valid.m1 I
cassava19453.valid.m1 Manihot esculenta cassava19453.valid.m1 I
cassava30955.valid.m1 Manihot esculenta cassava30955.valid.m1 I
cassava31336.valid.m1 Manihot esculenta cassava31336.valid.m1 I
Ca_02624 Cicer arietinum Ca_02624 I
Ca_13309 Cicer arietinum Ca_13309 I
Ca_16107 Cicer arietinum Ca_16107 I
Ca_21136 Cicer arietinum Ca_21136 I
Ciclev10027927m.g Citrus clementina Ciclev10027927m.g I
Ciclev10030878m.g Citrus clementina Ciclev10030878m.g I
Cla004068 Citrullus lanatus Cla004068 I
Cla008361 Citrullus lanatus Cla008361 I
Cla013524 Citrullus lanatus Cla013524 I
Cucsa.117790 Cucumis sativus Cucsa.117790 I
Cucsa.138770 Cucumis sativus Cucsa.138770 I
Cucsa.165230 Cucumis sativus Cucsa.165230 I
estExt_fgenesh1_pg.C_1140084 Physcomitrella patens estExt_fgenesh1_pg.C_1140084 N
Eucgr.B02351 Eucalyptus grandis Eucgr.B02351 I
Eucgr.J01245 Eucalyptus grandis Eucgr.J01245 I
evm.TU.supercontig_1.421 Carica papaya evm.TU.supercontig_1.421 I
evm.TU.supercontig_81.127 Carica papaya evm.TU.supercontig_81.127 I
e_gw1.132.51.1 Physcomitrella patens e_gw1.132.51.1 I
F775_10373 Aegilops tauschii F775_10373 I
F775_17181 Aegilops tauschii F775_17181 I
gene02230-v1.0-hybrid Fragaria vesca gene02230-v1.0-hybrid I
gene18432-v1.0-hybrid Fragaria vesca gene18432-v1.0-hybrid I
gene26492-v1.0-hybrid Fragaria vesca gene26492-v1.0-hybrid I
GLYMA07G15940 Glycine max GLYMA07G15940 I
GLYMA11G14760 Glycine max GLYMA11G14760 I
GLYMA11G34050 Glycine max GLYMA11G34050 I
GLYMA12G06680 Glycine max GLYMA12G06680 I
GLYMA13G41210 Glycine max GLYMA13G41210 I
GLYMA15G04200 Glycine max GLYMA15G04200 I
GLYMA18G04251 Glycine max GLYMA18G04251 I
GLYMA18G39911 Glycine max GLYMA18G39911 I
Gorai.003G130700 Gossypium raimondii Gorai.003G130700 I
Gorai.006G172000 Gossypium raimondii Gorai.006G172000 I
Gorai.009G098300 Gossypium raimondii Gorai.009G098300 I
Gorai.010G200900 Gossypium raimondii Gorai.010G200900 I
Gorai.011G266100 Gossypium raimondii Gorai.011G266100 I
Gorai.013G021300 Gossypium raimondii Gorai.013G021300 I
GRMZM2G063151 Zea mays GRMZM2G063151 I
GRMZM2G110309 Zea mays GRMZM2G110309 I
GRMZM2G133016 Zea mays GRMZM2G133016 I
GSMUA_Achr10G22620_001 Musa acuminata GSMUA_Achr10G22620_001 I
GSMUA_Achr7G15090_001 Musa acuminata GSMUA_Achr7G15090_001 I
GSMUA_Achr8G20810_001 Musa acuminata GSMUA_Achr8G20810_001 I
GSMUA_Achr9G03910_001 Musa acuminata GSMUA_Achr9G03910_001 I
gw1.98.100.1 Physcomitrella patens gw1.98.100.1 I
LjSGA_017694.1 Lotus japonicus LjSGA_017694.1 I
LjSGA_019393.1 Lotus japonicus LjSGA_019393.1 I
LPERR02G30830 Leersia perrieri LPERR02G30830 I
LPERR03G10840 Leersia perrieri LPERR03G10840 I
Lus10000947.g Linum usitatissimum Lus10000947.g I
Lus10002704.g Linum usitatissimum Lus10002704.g I
Lus10010844.g Linum usitatissimum Lus10010844.g I
Lus10016527.g Linum usitatissimum Lus10016527.g N
Lus10024385.g Linum usitatissimum Lus10024385.g I
Lus10040285.g Linum usitatissimum Lus10040285.g I
Lus10040795.g Linum usitatissimum Lus10040795.g N
MDP0000119092 Malus domestica MDP0000119092 N
MDP0000119184 Malus domestica MDP0000119184 I
MDP0000137531 Malus domestica MDP0000137531 I
MDP0000138764 Malus domestica MDP0000138764 N
MDP0000209974 Malus domestica MDP0000209974 I
MDP0000222004 Malus domestica MDP0000222004 N
mgf005791m Mimulus guttatus mgf005791m I
mgf007893m Mimulus guttatus mgf007893m I
MLOC_57410 Hordeum vulgare MLOC_57410 I
MLOC_59817 Hordeum vulgare MLOC_59817 I
MTR_2g097290 Medicago truncatula MTR_2g097290 I
MTR_3g067935 Medicago truncatula MTR_3g067935 I
MTR_5g080010 Medicago truncatula MTR_5g080010 I
MTR_7g061840 Medicago truncatula MTR_7g061840 I
OB02G44060 Oryza brachyantha OB02G44060 I
OB03G22340 Oryza brachyantha OB03G22340 I
OBART02G37370 Oryza barthii OBART02G37370 I
OBART03G12240 Oryza barthii OBART03G12240 I
OGLUM02G38510 Oryza glumaepatula OGLUM02G38510 I
OGLUM03G12230 Oryza glumaepatula OGLUM03G12230 I
OLONG_013725 Oryza longistaminata OLONG_013725 I
OLONG_025333 Oryza longistaminata OLONG_025333 I
OMERI01G33350 Oryza meridionalis OMERI01G33350 I
OMERI03G11490 Oryza meridionalis OMERI03G11490 I
ONIVA02G40130 Oryza nivara ONIVA02G40130 I
ONIVA11G13450 Oryza nivara ONIVA11G13450 I
OPUNC02G34540 Oryza punctata OPUNC02G34540 I
OPUNC03G11810 Oryza punctata OPUNC03G11810 I
orange1.1g042386m.g Citrus sinensis orange1.1g042386m.g I
ORGLA02G0325900 Oryza glaberrima ORGLA02G0325900 I
ORGLA03G0118300 Oryza glaberrima ORGLA03G0118300 I
ORUFI02G38880 Oryza rufipogon ORUFI02G38880 I
ORUFI03G12870 Oryza rufipogon ORUFI03G12870 I
OS03G0274300 Oryza sativa OS03G0274300 I
Pavir.Ea04142 Panicum virgatum Pavir.Ea04142 I
Pavir.Gb01315 Panicum virgatum Pavir.Gb01315 I
Pavir.Ia03771 Panicum virgatum Pavir.Ia03771 I
Pavir.J14051 Panicum virgatum Pavir.J14051 I
Pavir.J18132 Panicum virgatum Pavir.J18132 I
PDK_20s1300944g001 Phoenix dactylifera PDK_20s1300944g001 N
PDK_20s1590481g002 Phoenix dactylifera PDK_20s1590481g002 N
PGSC0003DMG400002138 Solanum tuberosum PGSC0003DMG400002138 I
PGSC0003DMG400006353 Solanum tuberosum PGSC0003DMG400006353 I
PGSC0003DMG400023432 Solanum tuberosum PGSC0003DMG400023432 I
PGSC0003DMG400030324 Solanum tuberosum PGSC0003DMG400030324 I
PK21687.1 Cannabis sativa PK21687.1 D
Pm000720 Prunus mume Pm000720 I
Pm002686 Prunus mume Pm002686 I
Pm018821 Prunus mume Pm018821 I
POPTR_0001s24840 Populus trichocarpa POPTR_0001s24840 I
POPTR_0006s08680 Populus trichocarpa POPTR_0006s08680 I
POPTR_0008s05740 Populus trichocarpa POPTR_0008s05740 I
POPTR_0009s03730 Populus trichocarpa POPTR_0009s03730 I
POPTR_0010s20990 Populus trichocarpa POPTR_0010s20990 I
PRUPE_ppa002374mg Prunus persica PRUPE_ppa002374mg I
PRUPE_ppa002403mg Prunus persica PRUPE_ppa002403mg I
PRUPE_ppa002522mg Prunus persica PRUPE_ppa002522mg I
SapurV1A.0040s0420 Salix purpurea SapurV1A.0040s0420 I
SapurV1A.0041s0150 Salix purpurea SapurV1A.0041s0150 I
SapurV1A.0281s0030 Salix purpurea SapurV1A.0281s0030 I
SapurV1A.0451s0070 Salix purpurea SapurV1A.0451s0070 I
Sb01g039650 Sorghum bicolor Sb01g039650 I
Sb06g019970 Sorghum bicolor Sb06g019970 I
SELMODRAFT_121021 Selaginella moellendorffii SELMODRAFT_121021 I
SELMODRAFT_123062 Selaginella moellendorffii SELMODRAFT_123062 I
SELMODRAFT_131544 Selaginella moellendorffii SELMODRAFT_131544 I
Si000591m.g Setaria italica Si000591m.g I
Si009551m.g Setaria italica Si009551m.g I
Si016548m.g Setaria italica Si016548m.g I
Si034524m.g Setaria italica Si034524m.g I
Solyc04g011650.2 Solanum lycopersicum Solyc04g011650.2 I
Solyc05g054410.2 Solanum lycopersicum Solyc05g054410.2 I
Solyc06g005590.2 Solanum lycopersicum Solyc06g005590.2 I
Solyc06g076270.2 Solanum lycopersicum Solyc06g076270.2 I
TBP1 Arabidopsis lyrata fgenesh2_kg.6__1339__AT5G13820.1 I
TCM_021921 Theobroma cacao TCM_021921 I
TCM_041816 Theobroma cacao TCM_041816 I
TCM_042704 Theobroma cacao TCM_042704 I
Thhalv10002472m.g Eutrema salsugineum Thhalv10002472m.g I
Thhalv10007062m.g Eutrema salsugineum Thhalv10007062m.g I
Thhalv10011058m.g Eutrema salsugineum Thhalv10011058m.g I
Thhalv10012893m.g Eutrema salsugineum Thhalv10012893m.g I
Thhalv10013086m.g Eutrema salsugineum Thhalv10013086m.g I
Thhalv10020283m.g Eutrema salsugineum Thhalv10020283m.g I
TRAES3BF045500220CFD_g Triticum aestivum TRAES3BF045500220CFD_g I
Traes_3DL_FCD561E40 Triticum aestivum Traes_3DL_FCD561E40 N
Traes_4AS_FA7E65184 Triticum aestivum Traes_4AS_FA7E65184 I
Traes_4BL_AB2636FB0 Triticum aestivum Traes_4BL_AB2636FB0 I
Traes_4DL_3849A9A5F Triticum aestivum Traes_4DL_3849A9A5F I
TRFL1 Arabidopsis lyrata fgenesh2_kg.5__1021__AT3G46590.3 I
TRFL2 Arabidopsis lyrata Al_scaffold_0001_698 I
TRFL4 Arabidopsis lyrata Al_scaffold_0005_2280 I
TRFL4 Arabidopsis thaliana AT3G53790 I
TRFL4 Vitis vinifera VIT_08s0007g00500 I
TRFL9 Arabidopsis lyrata fgenesh2_kg.3__1313__AT3G12560.1 I
TRIUR3_18647 Triticum urartu TRIUR3_18647 I
TRP1 Arabidopsis thaliana AT5G59430 D
TRP2 Arabidopsis thaliana AT3G46590 D
TRP3 Arabidopsis thaliana AT3G12560 I
TRP4 Arabidopsis thaliana AT5G13820 I
TRP5 Arabidopsis thaliana AT1G07540 D
VIT_06s0004g04940 Vitis vinifera VIT_06s0004g04940 I
VIT_13s0019g01670 Vitis vinifera VIT_13s0019g01670 I