Sb08g015555 (Sorghum bicolor)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Sb08g015555 T256090_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.729 0.729
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.729 0.729
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.729 0.729
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.708 0.708
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.708 0.708
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.708 0.708
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb08g015555.1 MADS box 12 59

Links

Other MADS box family TFs
Other Sorghum bicolor TFs

293 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R004053 Calypte anna Aan_R004053 I 0.000
Aan_R004381 Calypte anna Aan_R004381 I 0.000
Afo_R001041 Aptenodytes forsteri Afo_R001041 I 0.000
Afo_R016063 Aptenodytes forsteri Afo_R016063 I 0.000
Brh_R013214 Buceros rhinoceros Brh_R013214 I 0.000
DAPPUDRAFT_347217 Daphnia pulex DAPPUDRAFT_347217 I 0.000
ENSAMXG00000005278 Astyanax mexicanus ENSAMXG00000005278 I 0.000
ENSAMXG00000019181 Astyanax mexicanus ENSAMXG00000019181 I 0.000
ENSAPLG00000013972 Anas platyrhynchos ENSAPLG00000013972 I 0.000
ENSAPLG00000014844 Anas platyrhynchos ENSAPLG00000014844 I 0.000
ENSFALG00000010519 Ficedula albicollis ENSFALG00000010519 I 0.000
ENSFALG00000011974 Ficedula albicollis ENSFALG00000011974 I 0.000
ENSGALG00000010721 Gallus gallus ENSGALG00000010721 I 0.000
ENSGMOG00000018511 Gadus morhua ENSGMOG00000018511 I 0.000
ENSLACG00000012147 Latimeria chalumnae ENSLACG00000012147 I 0.000
ENSLOCG00000003071 Lepisosteus oculatus ENSLOCG00000003071 I 0.000
ENSLOCG00000012972 Lepisosteus oculatus ENSLOCG00000012972 I 0.000
ENSMEUG00000005102 Macropus eugenii ENSMEUG00000005102 I 0.000
ENSMEUG00000009882 Macropus eugenii ENSMEUG00000009882 I 0.000
ENSMPUG00000005095 Mustela putorius furo ENSMPUG00000005095 I 0.000
ENSNLEG00000008824 Nomascus leucogenys ENSNLEG00000008824 I 0.000
ENSOANG00000014997 Ornithorhynchus anatinus ENSOANG00000014997 I 0.000
ENSOARG00000013378 Ovis aries ENSOARG00000013378 I 0.000
ENSONIG00000014033 Oreochromis niloticus ENSONIG00000014033 I 0.000
ENSORLG00000003872 Oryzias latipes ENSORLG00000003872 I 0.000
ENSORLG00000007755 Oryzias latipes ENSORLG00000007755 I 0.000
ENSP00000371398 Macaca fascicularis ENSP00000371398 I 0.000
ENSP00000384734-D2 Bos grunniens ENSP00000384734-D2 I 0.000
ENSPANG00000025157 Papio anubis ENSPANG00000025157 I 0.000
ENSPFOG00000002618 Poecilia formosa ENSPFOG00000002618 I 0.000
ENSPFOG00000017914 Poecilia formosa ENSPFOG00000017914 I 0.000
ENSPFOG00000019805 Poecilia formosa ENSPFOG00000019805 I 0.000
ENSPPYG00000019250 Pongo abelii ENSPPYG00000019250 I 0.000
ENSPSIG00000002846 Pelodiscus sinensis ENSPSIG00000002846 I 0.000
ENSPSIG00000005966 Pelodiscus sinensis ENSPSIG00000005966 I 0.000
ENSSTOG00000000302 Ictidomys tridecemlineatus ENSSTOG00000000302 I 0.000
ENSTRUG00000001198 Takifugu rubripes ENSTRUG00000001198 I 0.000
ENSTSYG00000000686 Tarsius syrichta ENSTSYG00000000686 I 0.000
ENSXMAG00000005013 Xiphophorus maculatus ENSXMAG00000005013 I 0.000
ENSXMAG00000005337 Xiphophorus maculatus ENSXMAG00000005337 I 0.000
ENSXMAG00000013077 Xiphophorus maculatus ENSXMAG00000013077 I 0.000
e_gw.471.22.1 Branchiostoma floridae e_gw.471.22.1 I 0.000
Gfo_R010168 Geospiza fortis Gfo_R010168 I 0.000
Gfo_R012286 Geospiza fortis Gfo_R012286 I 0.000
GLIS1 Taeniopygia guttata ENSTGUG00000009294 I 0.000
GLIS1 Tetraodon nigroviridis ENSTNIG00000010694 I 0.000
GLIS1 Meleagris gallopavo ENSMGAG00000011303 I 0.000
GLIS1 Pan troglodytes ENSPTRG00000000756 I 0.000
GLIS1 Gasterosteus aculeatus ENSGACG00000012109 I 0.000
GLIS1 Cavia porcellus ENSCPOG00000009497 I 0.000
glis1a Danio rerio ENSDARG00000068580 I 0.000
glis1b Danio rerio ENSDARG00000027933 I 0.000
GLIS3 Procavia capensis ENSPCAG00000004139 I 0.000
glis3 Xenopus tropicalis XB-GENE-984727 I 0.000
GLIS3 Erinaceus europaeus ENSEEUG00000004107 I 0.000
GLIS3 Anolis carolinensis ENSACAG00000003374 I 0.000
GLIS3 Canis familiaris ENSCAFG00000031499 I 0.000
GLIS3 Callithrix jacchus ENSCJAG00000011083 I 0.000
GLIS3 Cavia porcellus ENSCPOG00000005523 I 0.000
GLIS3 Equus caballus ENSECAG00000020544 I 0.000
GLIS3 Taeniopygia guttata ENSTGUG00000005266 I 0.000
GLIS3 Echinops telfairi ENSETEG00000015977 I 0.000
GLIS3 Homo sapiens ENSG00000107249 D 0.000
GLIS3 Gallus gallus ENSGALG00000010180 I 0.000
GLIS3 Monodelphis domestica ENSMODG00000015403 I 0.000
Glis3 Mus musculus ENSMUSG00000052942 I 0.000
GLIS3 Otolemur garnettii ENSOGAG00000007376 I 0.000
GLIS3 Pteropus vampyrus ENSPVAG00000001839 I 0.000
Glis3 Rattus norvegicus ENSRNOG00000014768 I 0.000
gw.28.157.1 Branchiostoma floridae gw.28.157.1 I 0.000
ML145833a Mnemiopsis leidyi ML145833a I 0.000
Myotis_brandtii_GLIS3_10023567 Myotis brandtii Myotis_brandtii_GLIS3_10023567 I 0.000
Ogr17806 Ophisaurus gracilis Ogr17806 I 0.000
Pvit_10484 Pogona vitticeps Pvit_10484 I 0.000
Pvit_11533 Pogona vitticeps Pvit_11533 I 0.000
Sakowv30037345m.g Saccoglossus kowalevskii Sakowv30037345m.g I 0.000
SMAR005079 Strigamia maritima SMAR005079 I 0.000
SPU_018744 Strongylocentrotus purpuratus SPU_018744 I 0.000
Tal_R012308 Tyto alba Tal_R012308 I 0.000