evm.TU.contig_39415 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.contig_39415 T258120_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_39415.1 MADS box 5 53

Links

Other MADS box family TFs
Other Carica papaya TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.708
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.708
evm.TU.contig_36543 Carica papaya evm.TU.contig_36543 I 0.958
evm.TU.contig_40189 Carica papaya evm.TU.contig_40189 I 0.958
evm.TU.supercontig_1153.1 Carica papaya evm.TU.supercontig_1153.1 N 0.787
evm.TU.supercontig_118.9 Carica papaya evm.TU.supercontig_118.9 N 0.750
evm.TU.supercontig_51.120 Carica papaya evm.TU.supercontig_51.120 N 0.917
evm.TU.supercontig_51.124 Carica papaya evm.TU.supercontig_51.124 N 0.844
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.708
TCM_025670 Theobroma cacao TCM_025670 I 0.708