17148_YMR042W (Saccharomyces paradoxus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 17148_YMR042W T259300_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARG80
M08426_2.00 		Saccharomyces cerevisiae
WGACDC
GHGTCW		 ChIP-chip
Mathelier et al.(2014)
MA0271.1 		1.000 1.000
ARG80
M08588_2.00 		Saccharomyces cerevisiae
NNDVCBNVBDNGRHAR
YTDYCNHVBNVGBHNN		 Misc
DeBoer et al.(2011)
YMR042W_1483 		1.000 1.000
ARG80
M10989_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ARGRI_01 		1.000 1.000
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.771 0.771
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.771 0.771
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.771 0.771
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.771 0.771
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.771 0.771
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
17148_YMR042W MADS box 93 140

Links

Other MADS box family TFs
Other Saccharomyces paradoxus TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g013440 Brassica oleracea Bo3g013440 N
Bostr.2570s0035 Boechera stricta Bostr.2570s0035 N
Bostr.26527s0315 Boechera stricta Bostr.26527s0315 N
Cagra.0263s0023 Capsella grandiflora Cagra.0263s0023 N
Cagra.3793s0006 Capsella grandiflora Cagra.3793s0006 N
Carubv10000255m.g Capsella rubella Carubv10000255m.g N
Carubv10013017m.g Capsella rubella Carubv10013017m.g N
cassava1998.valid.m1 Manihot esculenta cassava1998.valid.m1 N
Ciclev10004376m.g Citrus clementina Ciclev10004376m.g N
Cucsa.253860 Cucumis sativus Cucsa.253860 N
evm.TU.supercontig_16.55 Carica papaya evm.TU.supercontig_16.55 N
FRS12 Arabidopsis thaliana AT5G18960 N
FRS7 Arabidopsis thaliana AT3G06250 N
gene06133-v1.0-hybrid Fragaria vesca gene06133-v1.0-hybrid N
GLYMA13G28230 Glycine max GLYMA13G28230 N
GLYMA15G10830 Glycine max GLYMA15G10830 N
Gorai.006G255400 Gossypium raimondii Gorai.006G255400 N
MDP0000254218 Malus domestica MDP0000254218 N
MDP0000295749 Malus domestica MDP0000295749 N
mgf010461m Mimulus guttatus mgf010461m N
mgf011099m Mimulus guttatus mgf011099m N
orange1.1g004138m.g Citrus sinensis orange1.1g004138m.g N
PK22885.1 Cannabis sativa PK22885.1 N
Pm008044 Prunus mume Pm008044 N
POPTR_0010s03000 Populus trichocarpa POPTR_0010s03000 N
PRUPE_ppa001884mg Prunus persica PRUPE_ppa001884mg N
SapurV1A.0152s0560 Salix purpurea SapurV1A.0152s0560 N
SapurV1A.0407s0270 Salix purpurea SapurV1A.0407s0270 N
SapurV1A.1026s0020 Salix purpurea SapurV1A.1026s0020 N
Solyc10g084220.1 Solanum lycopersicum Solyc10g084220.1 N
TCM_021065 Theobroma cacao TCM_021065 N
Thhalv10012731m.g Eutrema salsugineum Thhalv10012731m.g N
Thhalv10020128m.g Eutrema salsugineum Thhalv10020128m.g N
VIT_05s0020g02450 Vitis vinifera VIT_05s0020g02450 N