fgenesh2_kg.2__1540__AT1G72740.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.2__1540__AT1G72740.1 T270750_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.875 0.957
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.875 0.957
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.804 0.766
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.728 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__1540__AT1G72740.1 Myb 5 57

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014401 Ricinus communis 30147.m014401 I
AMTR_s00016p00083040 Amborella trichopoda AMTR_s00016p00083040 I
Aquca_043_00044 Aquilegia coerulea Aquca_043_00044 I
Bo2g161690 Brassica oleracea Bo2g161690 I
Bo3g109270 Brassica oleracea Bo3g109270 I
Bostr.26833s0050 Boechera stricta Bostr.26833s0050 I
Bra019619 Brassica rapa Bra019619 I
Bra029305 Brassica rapa Bra029305 I
BRADI5G20340 Brachypodium distachyon BRADI5G20340 I
Cagra.4553s0022 Capsella grandiflora Cagra.4553s0022 I
Carubv10028602m.g Capsella rubella Carubv10028602m.g I
cassava19992.m1 Manihot esculenta cassava19992.m1 I
cassava40548.m1 Manihot esculenta cassava40548.m1 I
Ca_01386 Cicer arietinum Ca_01386 I
chr1.CM0094.750.nd Lotus japonicus chr1.CM0094.750.nd I
Ciclev10033942m.g Citrus clementina Ciclev10033942m.g I
Cla019619 Citrullus lanatus Cla019619 I
Cucsa.156880 Cucumis sativus Cucsa.156880 I
estExt_fgenesh1_pg.C_740147 Physcomitrella patens estExt_fgenesh1_pg.C_740147 I
Eucgr.K02192 Eucalyptus grandis Eucgr.K02192 I
evm.TU.supercontig_13.181 Carica papaya evm.TU.supercontig_13.181 I
FL Oryza sativa OS04G0598300 I
FL Populus trichocarpa POPTR_0015s11820 I
gene30683-v1.0-hybrid Fragaria vesca gene30683-v1.0-hybrid I
gene30747-v1.0-hybrid Fragaria vesca gene30747-v1.0-hybrid I
gene30750-v1.0-hybrid Fragaria vesca gene30750-v1.0-hybrid I
gene33406-v1.0-hybrid Fragaria vesca gene33406-v1.0-hybrid I
GLYMA04G37900 Glycine max GLYMA04G37900 I
GLYMA06G17170 Glycine max GLYMA06G17170 I
Gorai.001G053900 Gossypium raimondii Gorai.001G053900 I
GRMZM2G098813 Zea mays GRMZM2G098813 I
GRMZM2G180190 Zea mays GRMZM2G180190 I
GSMUA_Achr6G16390_001 Musa acuminata GSMUA_Achr6G16390_001 I
LFY Arabidopsis thaliana AT5G61850 D
LFY Arabidopsis lyrata Al_scaffold_0008_2690 I
LFY Vitis vinifera VIT_17s0000g00150 I
LPERR04G19570 Leersia perrieri LPERR04G19570 I
Lus10016732.g Linum usitatissimum Lus10016732.g I
Lus10022427.g Linum usitatissimum Lus10022427.g I
mgf013601m Mimulus guttatus mgf013601m I
mgf020579m Mimulus guttatus mgf020579m I
MTR_3g098560 Medicago truncatula MTR_3g098560 I
OB04G30790 Oryza brachyantha OB04G30790 I
OBART04G23870 Oryza barthii OBART04G23870 I
OGLUM04G23830 Oryza glumaepatula OGLUM04G23830 I
OLONG_021167 Oryza longistaminata OLONG_021167 I
OMERI04G19760 Oryza meridionalis OMERI04G19760 I
ONIVA04G23030 Oryza nivara ONIVA04G23030 I
OPUNC04G21410 Oryza punctata OPUNC04G21410 I
orange1.1g044766m.g Citrus sinensis orange1.1g044766m.g I
ORGLA04G0204600 Oryza glaberrima ORGLA04G0204600 I
ORUFI04G25610 Oryza rufipogon ORUFI04G25610 I
OSL Oryza indica BGIOSGA014428 I
Pavir.Ga00621 Panicum virgatum Pavir.Ga00621 I
Pavir.Gb00795 Panicum virgatum Pavir.Gb00795 I
Pm024610 Prunus mume Pm024610 I
SapurV1A.2394s0010 Salix purpurea SapurV1A.2394s0010 I
Sb06g027340 Sorghum bicolor Sb06g027340 I
SELMODRAFT_85923 Selaginella moellendorffii SELMODRAFT_85923 I
Si011756m.g Setaria italica Si011756m.g I
Solyc03g118160.1 Solanum lycopersicum Solyc03g118160.1 I
TCM_014768 Theobroma cacao TCM_014768 I
Thhalv10005606m.g Eutrema salsugineum Thhalv10005606m.g I
Traes_2AL_83D0D0C3F Triticum aestivum Traes_2AL_83D0D0C3F I
Traes_2BL_8DEC0EFBF Triticum aestivum Traes_2BL_8DEC0EFBF I