POPTR_0008s12750 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0008s12750 T278351_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.793 0.796
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.771 0.774
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.771 0.774
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.690 0.710
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.690 0.710
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.690 0.710
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.687 0.720
MYB83
M01073_2.00 		Arabidopsis thaliana
YACCHACC
GGTDGGTR		 PBM
Sullivan et al.(2014)
pTH7140 		0.668 0.688
MYB83
M07066_2.00 		Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR		 Dap-seq
OMalley et al.(2016)
MYB83_col_a 		0.668 0.688
MYB83
M07067_2.00 		Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN		 Dap-seq
OMalley et al.(2016)
MYB83_colamp_a 		0.668 0.688
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s12750.1 Myb 13 60
POPTR_0008s12750.1 Myb 66 111

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

779 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004752 Ricinus communis 29929.m004752 I
Aquca_011_00344 Aquilegia coerulea Aquca_011_00344 I
Aquca_056_00105 Aquilegia coerulea Aquca_056_00105 I
ARR11 Arabidopsis thaliana AT1G67710 D
ARR11 Arabidopsis lyrata scaffold_201596.1 I
ARR11 Vitis vinifera VIT_01s0010g02230 I
BGIOSGA000304 Oryza indica BGIOSGA000304 I
Bo4g157430 Brassica oleracea Bo4g157430 I
Bo6g098710 Brassica oleracea Bo6g098710 I
Bo6g105120 Brassica oleracea Bo6g105120 I
Bostr.26959s0139 Boechera stricta Bostr.26959s0139 I
Bra004076 Brassica rapa Bra004076 I
Bra004245 Brassica rapa Bra004245 I
Bra032035 Brassica rapa Bra032035 I
BRADI2G58020 Brachypodium distachyon BRADI2G58020 I
Cagra.2261s0012 Capsella grandiflora Cagra.2261s0012 I
Carubv10020133m.g Capsella rubella Carubv10020133m.g I
cassava13981.valid.m1 Manihot esculenta cassava13981.valid.m1 I
cassava29171.valid.m1 Manihot esculenta cassava29171.valid.m1 I
cassava32312.m1 Manihot esculenta cassava32312.m1 I
Ca_11309 Cicer arietinum Ca_11309 I
Ciclev10031052m.g Citrus clementina Ciclev10031052m.g I
Cla023064 Citrullus lanatus Cla023064 I
Cucsa.394720 Cucumis sativus Cucsa.394720 I
Eucgr.H04693 Eucalyptus grandis Eucgr.H04693 I
Eucgr.H04694 Eucalyptus grandis Eucgr.H04694 I
evm.TU.supercontig_86.17 Carica papaya evm.TU.supercontig_86.17 I
F775_27736 Aegilops tauschii F775_27736 I
GLYMA05G27670 Glycine max GLYMA05G27670 I
GLYMA08G10650 Glycine max GLYMA08G10650 I
GLYMA11G37480 Glycine max GLYMA11G37480 I
GLYMA18G01434 Glycine max GLYMA18G01434 I
Gorai.005G173300 Gossypium raimondii Gorai.005G173300 I
GRMZM2G100318 Zea mays GRMZM2G100318 I
GRMZM2G177220 Zea mays GRMZM2G177220 I
GSMUA_Achr3G14630_001 Musa acuminata GSMUA_Achr3G14630_001 I
GSMUA_Achr8G32070_001 Musa acuminata GSMUA_Achr8G32070_001 I
LjSGA_022114.1 Lotus japonicus LjSGA_022114.1 I
LPERR01G35510 Leersia perrieri LPERR01G35510 I
Lus10006446.g Linum usitatissimum Lus10006446.g I
Lus10011389.g Linum usitatissimum Lus10011389.g I
Lus10019058.g Linum usitatissimum Lus10019058.g I
Lus10036303.g Linum usitatissimum Lus10036303.g I
MDP0000305167 Malus domestica MDP0000305167 I
MDP0000307383 Malus domestica MDP0000307383 I
MDP0000320381 Malus domestica MDP0000320381 I
mgf004388m Mimulus guttatus mgf004388m I
mgf013006m Mimulus guttatus mgf013006m I
MLOC_23250 Hordeum vulgare MLOC_23250 I
MTR_1g013180 Medicago truncatula MTR_1g013180 I
MTR_3g086100 Medicago truncatula MTR_3g086100 I
MTR_8g079940 Medicago truncatula MTR_8g079940 I
OB01G49660 Oryza brachyantha OB01G49660 I
OBART01G40940 Oryza barthii OBART01G40940 I
OGLUM01G45120 Oryza glumaepatula OGLUM01G45120 I
OLONG_004141 Oryza longistaminata OLONG_004141 I
OMERI01G37950 Oryza meridionalis OMERI01G37950 I
ONIVA01G45980 Oryza nivara ONIVA01G45980 I
OPUNC01G39740 Oryza punctata OPUNC01G39740 I
orange1.1g007940m.g Citrus sinensis orange1.1g007940m.g I
orange1.1g027234m.g Citrus sinensis orange1.1g027234m.g I
ORGLA01G0348700 Oryza glaberrima ORGLA01G0348700 I
ORUFI01G44260 Oryza rufipogon ORUFI01G44260 I
Pavir.Ea03527 Panicum virgatum Pavir.Ea03527 I
Pavir.J23046 Panicum virgatum Pavir.J23046 I
PDK_20s1379531g004 Phoenix dactylifera PDK_20s1379531g004 I
PGSC0003DMG400011980 Solanum tuberosum PGSC0003DMG400011980 I
PK07924.1 Cannabis sativa PK07924.1 D
Pm006838 Prunus mume Pm006838 I
POPTR_0008s18130 Populus trichocarpa POPTR_0008s18130 I
POPTR_0010s06290 Populus trichocarpa POPTR_0010s06290 I
PRUPE_ppa002679mg Prunus persica PRUPE_ppa002679mg I
RR26 Oryza sativa OS01G0904700 I
SapurV1A.0152s0010 Salix purpurea SapurV1A.0152s0010 I
SapurV1A.0206s0280 Salix purpurea SapurV1A.0206s0280 I
SapurV1A.0629s0180 Salix purpurea SapurV1A.0629s0180 I
Sb03g043080 Sorghum bicolor Sb03g043080 I
Si000815m.g Setaria italica Si000815m.g I
Solyc05g014260.2 Solanum lycopersicum Solyc05g014260.2 I
TCM_010701 Theobroma cacao TCM_010701 I
Thhalv10000098m.g Eutrema salsugineum Thhalv10000098m.g I
Thhalv10018396m.g Eutrema salsugineum Thhalv10018396m.g I
TRAES3BF094200030CFD_g Triticum aestivum TRAES3BF094200030CFD_g I
TRAES3BF107400040CFD_g Triticum aestivum TRAES3BF107400040CFD_g I
Traes_3AL_9D2735F60 Triticum aestivum Traes_3AL_9D2735F60 I
Traes_3B_D9F27151E Triticum aestivum Traes_3B_D9F27151E I
Traes_3DL_D82CA7827 Triticum aestivum Traes_3DL_D82CA7827 I
VIT_17s0000g10100 Vitis vinifera VIT_17s0000g10100 I