Carubv10020714m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10020714m.g T286402_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.804 0.882
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.804 0.882
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.804 0.882
MYB61
M07002_2.00 		Arabidopsis thaliana
HNYAMCHACCDNHNH
DNDNHGGTDGKTRND		 Dap-seq
OMalley et al.(2016)
MYB61_col_a 		0.766 0.892
MYB61
M07003_2.00 		Arabidopsis thaliana
NHNYACCWAMCDH
DHGKTWGGTRNDN		 Dap-seq
OMalley et al.(2016)
MYB61_colamp_a 		0.766 0.892
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.730 0.688
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.730 0.688
ATY53
M07078_2.00 		Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN
NNNNNNNNDDHGKTWGGTRVR		 Dap-seq
OMalley et al.(2016)
MYB67_col_a 		0.701 0.774
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.700 0.688
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.689 0.688
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.689 0.688
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.677 0.688
MYB46
M00877_2.00 		Arabidopsis thaliana
NAMCNDHHN
NDDHNGKTN		 PBM
Franco-Zorrilla et al.(2014)
MYB46 		0.673 0.763
MYB46
M11046_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB46_Q6 		0.673 0.763
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.670 0.677
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.670 0.677
MYB83
M01073_2.00 		Arabidopsis thaliana
YACCHACC
GGTDGGTR		 PBM
Sullivan et al.(2014)
pTH7140 		0.664 0.710
MYB83
M07066_2.00 		Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR		 Dap-seq
OMalley et al.(2016)
MYB83_col_a 		0.664 0.710
MYB83
M07067_2.00 		Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN		 Dap-seq
OMalley et al.(2016)
MYB83_colamp_a 		0.664 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020714m Myb 15 62
Carubv10020714m Myb 68 113

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

972 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30128.m008990 Ricinus communis 30128.m008990 N
AMTR_s00009p00257950 Amborella trichopoda AMTR_s00009p00257950 N
AMTR_s00057p00069720 Amborella trichopoda AMTR_s00057p00069720 N
AMTR_s00087p00039380 Amborella trichopoda AMTR_s00087p00039380 N
ATMYB16 Arabidopsis thaliana AT5G15310 I 0.671
BGIOSGA010548 Oryza indica BGIOSGA010548 N
Bo4g198650 Brassica oleracea Bo4g198650 N
Bo8g104180 Brassica oleracea Bo8g104180 N
Bostr.13129s0196 Boechera stricta Bostr.13129s0196 I
Bra024685 Brassica rapa Bra024685 N
Cagra.0876s0043 Capsella grandiflora Cagra.0876s0043 N
Cagra.5789s0001 Capsella grandiflora Cagra.5789s0001 N
cassava15703.m1 Manihot esculenta cassava15703.m1 N
cassava2662.m1 Manihot esculenta cassava2662.m1 N
cassava45648.m1 Manihot esculenta cassava45648.m1 N
chr1.CM0600.120.nd Lotus japonicus chr1.CM0600.120.nd N
chr5.CM0071.390.nd Lotus japonicus chr5.CM0071.390.nd N
Ciclev10023519m.g Citrus clementina Ciclev10023519m.g N
CM0385.220.nd Lotus japonicus CM0385.220.nd N
Eucgr.B03766 Eucalyptus grandis Eucgr.B03766 N
evm.TU.supercontig_1.55 Carica papaya evm.TU.supercontig_1.55 N
evm.TU.supercontig_34.3 Carica papaya evm.TU.supercontig_34.3 N
e_gw1.1.4.1 Physcomitrella patens e_gw1.1.4.1 N
F775_42755 Aegilops tauschii F775_42755 N
GLYMA0041S00310 Glycine max GLYMA0041S00310 I
GLYMA09G04370 Glycine max GLYMA09G04370 I
GLYMA16G16170 Glycine max GLYMA16G16170 N
Gorai.008G086400 Gossypium raimondii Gorai.008G086400 I
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I 0.688
GRMZM2G001223 Zea mays GRMZM2G001223 I
GRMZM2G051528 Zea mays GRMZM2G051528 I
LjSGA_014958.1 Lotus japonicus LjSGA_014958.1 N
LjSGA_034303.1 Lotus japonicus LjSGA_034303.1 N
LjSGA_057038.1 Lotus japonicus LjSGA_057038.1 N
LjSGA_057664.1 Lotus japonicus LjSGA_057664.1 N
MDP0000879675 Malus domestica MDP0000879675 N
MDP0000911051 Malus domestica MDP0000911051 N
mg021480m Mimulus guttatus mg021480m N
mgf017705m Mimulus guttatus mgf017705m N
mgf018056m Mimulus guttatus mgf018056m N
mgf020736m Mimulus guttatus mgf020736m N
mgf023771m Mimulus guttatus mgf023771m N
MLOC_12474 Hordeum vulgare MLOC_12474 N
MLOC_39554 Hordeum vulgare MLOC_39554 I
MLOC_71332 Hordeum vulgare MLOC_71332 N
MTR_1g087540 Medicago truncatula MTR_1g087540 N
MYB3 Arabidopsis thaliana AT1G22640 D
OB06G28240 Oryza brachyantha OB06G28240 N
ORGLA02G0219000 Oryza glaberrima ORGLA02G0219000 N
OS04G0517100 Oryza sativa OS04G0517100 N
OS05G0350900 Oryza sativa OS05G0350900 N
Pavir.Db00878 Panicum virgatum Pavir.Db00878 N
Pavir.Eb02286 Panicum virgatum Pavir.Eb02286 N
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I
Pavir.J14839 Panicum virgatum Pavir.J14839 N
Pavir.J25377 Panicum virgatum Pavir.J25377 N
PDK_20s1922781g001 Phoenix dactylifera PDK_20s1922781g001 N
PGSC0003DMG400014550 Solanum tuberosum PGSC0003DMG400014550 I
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N
PK00358.1 Cannabis sativa PK00358.1 N
PK21717.1 Cannabis sativa PK21717.1 N
Pm000007 Prunus mume Pm000007 N
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I
POPTR_0017s10780 Populus trichocarpa POPTR_0017s10780 N
Solyc03g098270.1 Solanum lycopersicum Solyc03g098270.1 N
TCM_041010 Theobroma cacao TCM_041010 I
Traes_3AL_F09C7CA19 Triticum aestivum Traes_3AL_F09C7CA19 N
Traes_3DL_D9A29948B Triticum aestivum Traes_3DL_D9A29948B N
Traes_5AS_D238844BB Triticum aestivum Traes_5AS_D238844BB N
Traes_7AS_ADDEF000C Triticum aestivum Traes_7AS_ADDEF000C N
Traes_7AS_FD974A17F Triticum aestivum Traes_7AS_FD974A17F N
Traes_7DS_76515C538 Triticum aestivum Traes_7DS_76515C538 N