PPA21777 (Pristionchus pacificus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 PPA21777 T305914_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-49
M02413_2.00 		Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN		 PBM
Weirauch et al.(2014)
pTH5891 		0.944 0.619
nhr-1
M00686_2.00 		Caenorhabditis elegans
ARTGATCA
TGATCAYT		 PBM
Narasimhan et al.(2015)
pTH9322 		0.889 0.603
CBG23380
M01296_2.00 		Caenorhabditis briggsae
NDBDHHANWN
NWNTDDHVHN		 PBM
Lambert et al.(2019)
pTH11449 		0.856 0.683
nhr-154
M00698_2.00 		Caenorhabditis elegans
NRBRYCAHWD
HWDTGRYVYN		 PBM
Narasimhan et al.(2015)
pTH10650 		0.856 0.667
nhr-204
M00704_2.00 		Caenorhabditis elegans
NDNTGRTMHN
NDKAYCANHN		 PBM
Narasimhan et al.(2015)
pTH10028 		0.848 0.524
CBG26996_CONSTRUCT
M01300_2.00 		PBM CONSTRUCTS
NNNNTGRWMN
NKWYCANNNN		 PBM
Lambert et al.(2019)
pTH11460 		0.826 0.508
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA21777 Nuclear receptor 60 122

Links

Other Nuclear receptor family TFs
Other Pristionchus pacificus TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30128.m009035 Ricinus communis 30128.m009035 I
30147.m014441 Ricinus communis 30147.m014441 N
ANAC083 Arabidopsis lyrata scaffold_601328.1 I
ANAC083 Vitis vinifera VIT_01s0146g00280 I
Aquca_021_00051 Aquilegia coerulea Aquca_021_00051 I
Bo2g011120 Brassica oleracea Bo2g011120 I
Bo4g181990 Brassica oleracea Bo4g181990 I
Bo9g168950 Brassica oleracea Bo9g168950 I
Bostr.2902s0053 Boechera stricta Bostr.2902s0053 I
Bra006186 Brassica rapa Bra006186 I
Bra008849 Brassica rapa Bra008849 I
Bra021856 Brassica rapa Bra021856 I
Bra023395 Brassica rapa Bra023395 I
Cagra.0596s0010 Capsella grandiflora Cagra.0596s0010 I
Carubv10002548m.g Capsella rubella Carubv10002548m.g I
cassava1138.valid.m1 Manihot esculenta cassava1138.valid.m1 I
cassava12891.valid.m1 Manihot esculenta cassava12891.valid.m1 I
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I
Ciclev10032547m.g Citrus clementina Ciclev10032547m.g I
Cla001517 Citrullus lanatus Cla001517 I
Cla011059 Citrullus lanatus Cla011059 I
Cucsa.095210 Cucumis sativus Cucsa.095210 N
Cucsa.349370 Cucumis sativus Cucsa.349370 I
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I
Eucgr.H03387 Eucalyptus grandis Eucgr.H03387 I
evm.TU.supercontig_4.138 Carica papaya evm.TU.supercontig_4.138 N
GLYMA08G47520 Glycine max GLYMA08G47520 I
GLYMA18G53954 Glycine max GLYMA18G53954 I
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I
Gorai.012G125500 Gossypium raimondii Gorai.012G125500 I
GSMUA_Achr10G11910_001 Musa acuminata GSMUA_Achr10G11910_001 N
MDP0000126517 Malus domestica MDP0000126517 I
MDP0000130123 Malus domestica MDP0000130123 I
NAC083 Arabidopsis thaliana AT5G13180 D
orange1.1g030727m.g Citrus sinensis orange1.1g030727m.g I
PK12461.1 Cannabis sativa PK12461.1 I
Pm007070 Prunus mume Pm007070 I
POPTR_0001s13380 Populus trichocarpa POPTR_0001s13380 I
POPTR_0003s16490 Populus trichocarpa POPTR_0003s16490 I
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I
SapurV1A.0453s0210 Salix purpurea SapurV1A.0453s0210 I
TCM_008477 Theobroma cacao TCM_008477 I
Thhalv10014495m.g Eutrema salsugineum Thhalv10014495m.g I