CBG26996_CONSTRUCT (PBM CONSTRUCTS)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 CBG26996_CONSTRUCT T306949_2.00 HughesLab (2013-Jun-13)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CBG26996_CONSTRUCT
M01300_2.00		 PBM CONSTRUCTS
NNNNTGRWMN
NKWYCANNNN		 PBM
Lambert et al.(2019)
pTH11460		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-204
M00704_2.00 		Caenorhabditis elegans
NDNTGRTMHN
NDKAYCANHN		 PBM
Narasimhan et al.(2015)
pTH10028 		0.961 0.729
For this family, TFs with SR scores > 0.745 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01300_2.00 Nuclear receptor 45 117

DNA Binding Domains

Protein ID Domain From To Sequence
CBG26996_CONSTRUCT Nuclear receptor 45 117

Links

Other Nuclear receptor family TFs
Other PBM CONSTRUCTS TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG26996 Caenorhabditis briggsae CBG26996 I 0.994
CBN23409 Caenorhabditis brenneri CBN23409 I 0.986
CBN28056 Caenorhabditis brenneri CBN28056 I 0.986
CJA14829 Caenorhabditis japonica CJA14829 I 0.972
nhr-204 Caenorhabditis elegans WBGene00019816 D 0.961
nhr-141 Caenorhabditis elegans WBGene00017787 I 0.881
L893_g28857 Steinernema glaseri L893_g28857 I 0.839
scaffold43-EXSNAP2012.41 Pristionchus exspectatus scaffold43-EXSNAP2012.41 I 0.831
PPA21777 Pristionchus pacificus PPA21777 I 0.826
L889_g1557 Steinernema feltiae L889_g1557 I 0.825
L898_g9866 Steinernema monticolum L898_g9866 I 0.825
NECAME_08394 Necator americanus NECAME_08394 I 0.813
PPA29597 Pristionchus pacificus PPA29597 I 0.805
PPA06637 Pristionchus pacificus PPA06637 I 0.803
HCOI01292200 Haemonchus contortus HCOI01292200 I 0.802
HPLM_0000769401 Haemonchus placei HPLM_0000769401 I 0.800
L892_g4169 Steinernema scapterisci L892_g4169 I 0.793
scaffold552-EXSNAP2012.18 Pristionchus exspectatus scaffold552-EXSNAP2012.18 I 0.792
L889_g1891 Steinernema feltiae L889_g1891 I 0.788
SMUV_0001072301 Syphacia muris SMUV_0001072301 I 0.786
CJA00680 Caenorhabditis japonica CJA00680 I 0.785
scaffold426-EXSNAP2012.35 Pristionchus exspectatus scaffold426-EXSNAP2012.35 I 0.768
CBN24827 Caenorhabditis brenneri CBN24827 I 0.767
CBG10855 Caenorhabditis briggsae CBG10855 I 0.765
CJA08896 Caenorhabditis japonica CJA08896 I 0.765
nhr-120 Caenorhabditis elegans WBGene00003710 I 0.765
CRE00149 Caenorhabditis remanei CRE00149 I 0.764
L596_g27472 Steinernema carpocapsae L596_g27472 I 0.762
ASIM_0001569801 Anisakis simplex ASIM_0001569801 I 0.758
L893_g3565 Steinernema glaseri L893_g3565 I 0.749
L892_g17612 Steinernema scapterisci L892_g17612 I 0.748
scaffold251-EXSNAP2012.44 Pristionchus exspectatus scaffold251-EXSNAP2012.44 I 0.746
scaffold826-EXSNAP2012.10 Pristionchus exspectatus scaffold826-EXSNAP2012.10 I 0.746